A Biomarker Validation Approach for Classification and Predicting Survival Using Metabolomics Signature


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Documentation for package ‘MetabolicSurv’ version 1.0.0

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MetabolicSurv-package MetabolicSurv: A biomarker validation approach for predicting survival using metabolic signature.
CVLasoelacox Cross Validations for Lasso Elastic Net Survival predictive models and Classification
cvle The cvle Class.
cvle-class The cvle Class.
CVMajorityvotes Cross validation for majority votes
CVMetSpecificCoxPh Cross validation for the Metabolite specific analysis
cvmm The cvmm Class.
cvmm-class The cvmm Class.
cvmv The cvmv Class.
cvmv-class The cvmv Class.
CVPcaPls Cross Validations for PCA and PLS based methods
cvpp The cvpp Class.
cvpp-class The cvpp Class.
CVSim Cross validation for sequentially increases metabolites
cvsim The cvsim Class.
cvsim-class The cvsim Class.
DataHR Survival and Prognostic Data .
DistHR Null Distribution of the Estimated HR
EstimateHR Classification, Survival Estimation and Visualization
fcv The fcv Class.
fcv-class The fcv Class.
Icvlasoel Inner and Outer Cross Validations for Lasso Elastic Net Survival predictive models and Classification
Lasoelacox Wapper function for glmnet
Majorityvotes Classifiction for Majority Votes
MetabolicSurv MetabolicSurv: A biomarker validation approach for predicting survival using metabolic signature.
MetFreq Frequency of Selected Metabolites from the Metabolite specific Cross Validation
ms The ms Class.
ms-class The ms Class.
MSData Generate Artificial Metabolic Survival Data
MSpecificCoxPh Metabolite by metabolite Cox proportional analysis
perm The perm Class.
perm-class The perm Class.
plot-method The cvle Class.
plot-method The cvmm Class.
plot-method The cvmv Class.
plot-method The cvpp Class.
plot-method The cvsim Class.
plot-method The fcv Class.
plot-method The ms Class.
plot-method The perm Class.
QuantileAnalysis Quantile sensitivity analysis
show-method The cvle Class.
show-method The cvmm Class.
show-method The cvmv Class.
show-method The cvpp Class.
show-method The cvsim Class.
show-method The fcv Class.
show-method The ms Class.
show-method The perm Class.
SIMet Sequential Increase in Metabolites for the PCA or PLS classifier
summary-method The cvle Class.
summary-method The cvmm Class.
summary-method The cvmv Class.
summary-method The cvpp Class.
summary-method The cvsim Class.
summary-method The fcv Class.
summary-method The ms Class.
summary-method The perm Class.
SurvPcaClass Survival PCA and Classification for metabolic data
SurvPlsClass Survival PLS and Classification for metabolic data