MonoPhy-package |
Allows to explore monophyly (or lack of it) of taxonomic groups in a phylogeny. |
AssessMonophyly |
Assesses monophyly (or lack of it) of taxonomic groups in a phylogeny. |
Ericacsubfams |
Example dataset for the package MonoPhy. |
Ericactree |
Example dataset for the package MonoPhy. |
Ericactribes |
Example dataset for the package MonoPhy. |
GetAncNodes |
Get MRCA nodes of taxonomic groups from 'AssessMonophyly' output |
GetIntruderTaxa |
Get taxa or tips which are intruders or outliers to a taxon from AssessMonophyly |
GetIntruderTips |
Get taxa or tips which are intruders or outliers to a taxon from AssessMonophyly |
GetOutlierTaxa |
Get taxa or tips which are intruders or outliers to a taxon from AssessMonophyly |
GetOutlierTips |
Get taxa or tips which are intruders or outliers to a taxon from AssessMonophyly |
GetResultMonophyly |
Get main result table from 'AssessMonophyly' output |
GetSummaryMonophyly |
Get main result table from 'AssessMonophyly' output |
MonoPhy |
Allows to explore monophyly (or lack of it) of taxonomic groups in a phylogeny. |
MonophylyData |
Example dataset for the package MonoPhy. |
PlotMonophyly |
Plot output of AssessMonophyly |