Analysis of Metabolomics Data


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Documentation for package ‘NormalizeMets’ version 0.25

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NormalizeMets-package NormalizeMets package
alldata-class Metabolomic alldata- class
alldataC A designed metabolomics dataset
alldatacheck Check all data
alldata_eg LC-MS metabolomics dataset
ComparePcaPlots Compare PCA Plots
ComparePvalHist p-value Histogram
CompareRlaPlots CompareRlaPlots
CompareVolcanoPlots Compare Volcano plots
ContrastMatrix Contrast matrix
Corr Computes correlation matrix for a metabolomics dataset or compares the correlation between two metabolomics datasets
dataview Data Viewing
Dendrogram Dendrogram
Didata Direct infusion mass spectrometry metabolomics dataset
editcolnames Edit column names of a metabolomic data matrix
featuredata_roots A metabolomics dataset analyzed by GC-TOF/MS.
GenerateReport Generate Report
HeatMap Heat map
LinearModelFit Linear models
LogTransform Log transformation
metgroupCheck Check data compatibility
MissingValues Missing value replacement
mixdata A designed metabolomics dataset
multiplot Multiple plot function ggplot objects can be passed in ..., or to plotlist (as a list of ggplot objects)
NormalizeMets NormalizeMets package
NormCombined Normalisation methods based on a combination of methods
NormQcmets Normalisation methods based on quality control metabolites
NormQcsamples Normalisation methods based on quality control samples
NormScaling Normalisation methods based on scaling
PcaPlots PCA plots
RlaPlots RLA plots
SvmFit support vector machine
ToInputdata Convert to Inputdata
UVdata A designed metabolomics dataset
uv_ruvrandclust The 'UVdata' normalized by the RUV random for clustering method
VennPlot Venn Diagram
VolcanoPlot Volcano plot