SNPknock.fp.loadFit | Load the parameter estimates obtained by fastPHASE |
SNPknock.fp.loadFit_hmm | Load the parameter estimates obtained by fastPHASE and assembles the HMM model for genotype data |
SNPknock.fp.runFastPhase | Calls fastPHASE to fit an HMM to genotype data |
SNPknock.fp.writeX | Convert a genetic matrix X into the fastPHASE input format |
SNPknock.knockoffDMC | Knockoff copies of a discrete Markov chain |
SNPknock.knockoffGenotypes | Knockoff copies of unphased genotypes |
SNPknock.knockoffHaplotypes | Knockoff copies of phased haplotypes |
SNPknock.knockoffHMM | Knockoff copies of a hidden Markov model |
SNPknock.models.sampleDMC | Sample discrete Markov chains |
SNPknock.models.sampleHMM | Sample hidden Markov models |