.XenaHub |
@title a S4 class to represent UCSC Xena Data Hubs @slot hosts hosts of data hubs @slot cohorts cohorts of data hubs @slot datasets datasets of data hubs @importFrom methods new |
availTCGA |
Get or Check TCGA Available ProjectID, DataType and FileType |
cohorts |
Get cohorts of XenaHub object |
datasets |
Get datasets of XenaHub object |
downloadTCGA |
Easily Download TCGA Data by Several Options |
getTCGAdata |
Get TCGA Common Data Sets by Project ID and Property |
hosts |
Get hosts of XenaHub object |
samples |
Get Samples of a XenaHub object according to 'by' and 'how' action arguments |
showTCGA |
Show TCGA data structure by Project ID or ALL |
to_snake |
Convert camel case to snake case |
XenaBrowse |
View One Dataset or Cohort Using Web browser |
XenaData |
Xena Hub Information |
XenaDataUpdate |
Get or Update Newest Data Information of UCSC Xena Data Hubs |
XenaDownload |
Download Datasets from UCSC Xena Hubs |
XenaFilter |
Filter a XenaHub Object |
XenaGenerate |
Generate and Subset a XenaHub Object from 'XenaData' |
XenaHub |
Generate a XenaHub Object |
XenaHub-class |
@title a S4 class to represent UCSC Xena Data Hubs @slot hosts hosts of data hubs @slot cohorts cohorts of data hubs @slot datasets datasets of data hubs @importFrom methods new |
XenaPrepare |
Prepare (Load) Downloaded Datasets to R |
XenaQuery |
Query URL of Datasets before Downloading |
XenaShiny |
Xena Shiny App |
xena_default_hosts |
UCSC Xena Default Hosts |