adiv-package |
Analysis of Diversity |
abgaptree |
Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
abgevodivparam |
Apportionment of Parametric Indices of Phylogenetic Diversity |
adiv |
Analysis of Diversity |
apd |
Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
aptree |
Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
batcomm |
Bat Abundance and Phylogeny Along a Disturbance Gradient in a Neotropical Rainforest |
betastatjac |
Multiple-Site Dissimilarity Measure for Species Presence/Absence Data |
betastatsor |
Multiple-Site Dissimilarity Measure for Species Presence/Absence Data |
birdData |
Avian Communities along Successional Forest Gradients |
CFbinary |
Matrices of Intra- and Inter-Specific Similarities |
CFprop |
Matrices of Intra- and Inter-Specific Similarities |
crossdpcoa_maineffect |
Crossed-DPCoA |
crossdpcoa_version1 |
Crossed-DPCoA |
crossdpcoa_version2 |
Crossed-DPCoA |
discomQE |
Quadratic Entropy |
dissABC |
Phylogenetic and Functional Similarity between Communities |
dissRicotta |
Plot-to-Plot Functional or Phylogenetic Dissimilarity |
distinctDis |
Dissimilarity-based Species' Originality |
distinctTopo |
Topology-based Species' Originality |
distinctTree |
Tree-based Species' Originality |
distinctUltra |
Ultrametric Tree-based Species' Originality |
distMS |
Marczewski-Steinhaus Coefficient |
divparam |
Parametric Indices of Species Diversity |
DJac |
Functional Dissimilarity Measures for Presence-Absence Data |
dsimcom |
Functional or Phylogenetic Similarity between Species and Communities |
dsimFun |
Functional or Phylogenetic Similarity between Species and Communities |
dsimTaxo |
Functional or Phylogenetic Similarity between Species and Communities |
dsimTree |
Functional or Phylogenetic Similarity between Species and Communities |
EH |
Faith Phylogenetic Diversity |
EqRao |
Apportionment of Diversity |
EqRS |
Apportionment of Diversity |
EqRSintra |
Apportionment of Diversity |
evoCA |
Evolutionary Correspondence Analysis |
evodiss |
Pair-wise Phylogenetic Dissimilarities between Communities |
evodiss_family |
A Family of Indices Dedicated to Pair-wise Phylogenetic Dissimilarities between Communities |
evodiss_ternaryplot |
A Family of Indices Dedicated to Pair-wise Phylogenetic Dissimilarities between Communities |
evoNSCA |
Evolutionary Non-Symmetric Correspondence Analysis |
evopcachord |
Evolutionary Principal Component analyses |
evopcahellinger |
Evolutionary Principal Component analyses |
Jac |
Functional Dissimilarity Measures for Presence-Absence Data |
K |
Indices K, Kstar and Kw of Phylogenetic Signal |
Kstar |
Indices K, Kstar and Kw of Phylogenetic Signal |
Kw |
Indices K, Kstar and Kw of Phylogenetic Signal |
multiCFbinary |
Matrices of Intra- and Inter-Specific Similarities |
multiCFprop |
Matrices of Intra- and Inter-Specific Similarities |
optimEH |
Nee and May's Optimizing Process |
orisaved |
Maximal or Minimal Amount of Originality Saved under Optimal Conditions |
PADDis |
Functional Dissimilarity Measures for Presence-Absence Data |
pIa |
Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
plot.abgevodivparam |
Apportionment of Parametric Indices of Phylogenetic Diversity |
plot.aptree |
Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
plot.divparam |
Parametric Indices of Species Diversity |
plot.rlqESLTP |
Linking Patterns in Phylogeny, Traits, Abiotic Variables and Space |
plot.rtestaptree |
Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
QE |
Quadratic Entropy |
qHdiv |
Biodiversity Measure that Includes Consistent Interspecific and Intraspecific Components |
randEH |
Amount of Evolutionary History Preserved when Random Species are Saved |
rare_Rao |
Functional Rarefaction for Species Abundance Data |
RDMCCP16 |
Theoretical Data Set used in Ricotta et al. (2016) |
rlqESLTP |
Linking Patterns in Phylogeny, Traits, Abiotic Variables and Space |
rockfish |
Rockfish Phylogenetic Diversity in Southern California Bight |
RP15EI |
Theoretical Data Set used in Ricotta and Pavoine (2015) in Ecological Indicators |
RP15JVS |
Theoretical Data Set used in Ricotta and Pavoine (2015) in Journal of Vegetation Science |
RPP16EE |
Theoretical Data Set used in Ricotta et al. (2016) in Ecology and Evolution |
rtestaptree |
Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
rtestEqRao |
Apportionment of Diversity |
rtestEqRS |
Apportionment of Diversity |
rtestEqRSintra |
Apportionment of Diversity |
rtestwapqe |
Apportionment of Diversity |
SQ |
Functional or Phylogenetic Similarity between Species and Communities |
summary.rlqESLTP |
Linking Patterns in Phylogeny, Traits, Abiotic Variables and Space |
tecAptree |
Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
twoHmax |
Maximization of the Diversity Index TwoH |
uniqueness |
Functional Uniqueness and Functional Redundancy of Biological Communities |
wapqe |
Apportionment of Diversity |