bnpsd-package |
A package for modeling and simulating an admixed population |
bnpsd |
A package for modeling and simulating an admixed population |
coanc |
Construct the coancestry matrix of an admixture model |
coanc_to_kinship |
Transform coancestry matrix to kinship matrix |
fixed_loci |
Identify fixed loci |
fst |
Calculate FST for the admixed individuals |
q1d |
Construct admixture proportion matrix for 1D geography |
q1dc |
Construct admixture proportion matrix for circular 1D geography |
qis |
Construct admixture proportion matrix for independent subpopulations |
rbnpsd |
Simulate random allele frequencies and genotypes from the BN-PSD admixture model |
rgeno |
Draw genotypes from the admixture model |
rpanc |
Draw uniform ancestral allele frequencies |
rpiaf |
Construct individual-specific allele frequency matrix |
rpint |
Draw intermediate subpopulation allele frequencies |