Analysis of Binary Character Evolution


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Documentation for package ‘corHMM’ version 1.22

Help Pages

ancRECON Ancestral state reconstruction
ConvertPhangornReconstructions Convert phangorn reconstruction to a vector
corDISC Correlated evolution binary traits
corHMM Hidden Rates Model
corPAINT Binary character evolution with tree painting
dev.raydisc Evolution of categorical traits
lewisMkv Phylogenetic inference of morphology using mkv model
plotRECON Plot ancestral state reconstructions
primates Example datasets
primates.paint Example datasets
rate.mat.maker Rate matrix maker
rate.par.drop Rate matrix maker
rate.par.eq Rate matrix maker
rayDISC Evolution of categorical traits
rayDISC.example Example datasets
readNexusMorph Reads morphological character data In NEXUS Format