ctsem-package | ctsem |
AnomAuth | AnomAuth |
ctCheckFit | Check absolute fit of ctFit or ctStanFit object. |
ctCI | ctCI Computes confidence intervals on specified parameters / matrices for already fitted ctsem fit object. |
ctCollapse | ctCollapse Easily collapse an array margin using a specified function. |
ctCompareExpected | ctCompareExpected Compares model implied to observed means and covariances for panel data fit with ctsem. |
ctDeintervalise | ctDeintervalise |
ctDensity | ctDensity |
ctDiscretePars | ctDiscretePars |
ctDiscretiseData | Discretise long format continuous time (ctsem) data to specific timestep. |
ctExample1 | ctExample1 |
ctExample1TIpred | ctExample1TIpred |
ctExample2 | ctExample2 |
ctExample2level | ctExample2level |
ctExample3 | ctExample3 |
ctExample4 | ctExample4 |
ctFit | Fit a ctsem object |
ctGenerate | ctGenerate |
ctGenerateFromFit | Generates data according to the model estimated in a ctsemFit object.#' |
ctIndplot | ctIndplot |
ctIntervalise | Converts absolute times to intervals for wide format ctsem panel data |
ctKalman | ctKalman |
ctKalmanPlot | ctKalmanPlot |
ctLongToWide | ctLongToWide Restructures time series / panel data from long format to wide format for ctsem analysis |
ctModel | Define a ctsem model |
ctModelFromFit | Extract a ctsem model structure with parameter values from a ctsem fit object. |
ctMultigroupFit | Fits a multiple group continuous time model. |
ctPlot | ctPlot |
ctPlotArray | Plots three dimensional y values for quantile plots |
ctPoly | Plots uncertainty bands with shading |
ctPostPredict | Posterior predictive type check for ctsemFit. |
ctRefineTo | ctRefineTo |
ctsem | ctsem |
ctStanContinuousPars | ctStanContinuousPars |
ctStanDiscretePars | ctStanDiscretePars |
ctStanDiscreteParsPlot | ctStanDiscreteParsPlot |
ctStanFit | ctStanFit |
ctStanGenerateData | Add a $generated object to ctstanfit object, with random data generated from posterior of ctstanfit object |
ctStanModel | Convert a frequentist (omx) ctsem model specification to Bayesian (Stan). |
ctStanParMatrices | Returns model equation and other matrices from a ctStanFit object, and vector of values for free parameters. |
ctStanParnames | ctStanParnames |
ctStanPlot | plot.ctStanFit |
ctStanPlotPost | ctStanPlotPost |
ctStanPostPredict | Compares model implied density and values to observed, for a ctStanFit object. |
ctstantestdat | ctstantestdat |
ctstantestfit | ctstantestfit |
ctStanTIpredeffects | Get time independent predictor effect estimates |
ctStanTIpredMarginal | Plot marginal relationships between covariates and parameters for a ctStanFit object. |
ctStanUpdModel | Update an already compiled and fit ctStanFit object |
ctWideNames | ctWideNames sets default column names for wide ctsem datasets. Primarily intended for internal ctsem usage. |
ctWideToLong | ctWideToLong Convert ctsem wide to long format |
datastructure | datastructure |
extract.ctStanFit | Extract samples from a ctStanFit object |
inv_logit | Inverse logit |
isdiag | Diagnostics for ctsem importance sampling |
Kalman | Kalman |
longexample | longexample |
msquare | Right multiply a matrix by its transpose. |
optimstan | Optimize / importance sample a stan or ctStan model. |
Oscillating | Oscillating |
plot.ctsemFit | Plotting function for object class ctsemFit |
plot.ctsemFitMeasure | Misspecification plot using ctCheckFit output |
plot.ctsemMultigroupFit | Plot function for ctsemMultigroupFit object |
plot.ctStanFit | plot.ctStanFit |
plot.ctStanModel | Prior plotting |
sdpcor2cov | sdcor2cov |
stanWplot | Runs stan, and plots sampling information while sampling. |
stan_checkdivergences | Analyse divergences in a stanfit object |
stan_confidenceRegion | Extract functions of multiple variables from a stanfit object |
stan_postcalc | Compute functions of matrices from samples of a stanfit object |
stan_unconstrainsamples | Convert samples from a stanfit object to the unconstrained scale |
summary.ctsemFit | Summary function for ctsemFit object |
summary.ctsemMultigroupFit | Summary function for ctsemMultigroupFit object |
summary.ctStanFit | summary.ctStanFit |