dbparser-package | dbparser: A package for reading and parsing drug bank xml with the option to save it in a given db. |
close_db | Close open drug bank sql database |
dbparser | dbparser: A package for reading and parsing drug bank xml with the option to save it in a given db. |
get_drugbank_exported_date | Return uploaded drugbank database exported date |
get_drugbank_metadata | Return uploaded drugbank database metadata |
get_drugbank_version | Return uploaded drugbank database version |
get_xml_db_rows | Reads drug bank xml database and set it in memory. |
open_db | Establish connection to given data base |
parse_drug | Extracts the main drug elements and return data as data frame. |
parse_drug_affected_organisms | Extracts the drug affected organisms element and return data as data frame. |
parse_drug_ahfs_codes | Extracts the drug ahfs codes element and return data as data frame. |
parse_drug_all | Extracts the all drug elements and return data as list of dataframes. |
parse_drug_articles | Extracts the drug articles element and return data as data frame. |
parse_drug_atc_codes | Extracts the drug atc codes element and return data as data frame. |
parse_drug_books | Extracts the drug books element and return data as data frame. |
parse_drug_carriers | Extracts the drug carriers element and return data as data frame. |
parse_drug_carriers_actions | Extracts the drug carriers actions element and return data as data frame. |
parse_drug_carriers_articles | Extracts the drug carriers articles element and return data as data frame. |
parse_drug_carriers_links | Extracts the drug carriers links element and return data as data frame. |
parse_drug_carriers_polypeptides | Extracts the drug carriers polypeptides element and return data as data frame. |
parse_drug_carriers_polypeptides_external_identifiers | Extracts the drug carriers polypeptides external identifiers element and return data as data frame. |
parse_drug_carriers_polypeptides_go_classifiers | Extracts the drug carriers polypeptides go classifiers element and return data as data frame. |
parse_drug_carriers_polypeptides_pfams | Extracts the drug carriers polypeptides pfams element and return data as data frame. |
parse_drug_carriers_polypeptides_synonyms | Extracts the drug carriers polypeptides synonyms element and return data as data frame. |
parse_drug_carriers_textbooks | Extracts the drug carriers textbooks element and return data as data frame. |
parse_drug_categories | Extracts the drug categories element and return data as data frame. |
parse_drug_classifications | Extracts the drug classifications element and return data as data frame. |
parse_drug_dosages | Extracts the drug dosages element and return data as data frame. |
parse_drug_element | Extracts the given drug elements and return data as list of dataframes. |
parse_drug_element_options | Returns 'parse_drug_element' valid options. |
parse_drug_enzymes | Extracts the drug enzymes element and return data as data frame. |
parse_drug_enzymes_actions | Extracts the drug enzymes actions element and return data as data frame. |
parse_drug_enzymes_articles | Extracts the drug enzymes articles element and return data as data frame. |
parse_drug_enzymes_links | Extracts the drug enzymes links element and return data as data frame. |
parse_drug_enzymes_polypeptides | Extracts the drug enzymes polypeptides element and return data as data frame. |
parse_drug_enzymes_polypeptides_external_identifiers | Extracts the drug enzymes polypeptides external identifiers element and return data as data frame. |
parse_drug_enzymes_polypeptides_go_classifiers | Extracts the drug groups element and return data as data frame. |
parse_drug_enzymes_polypeptides_pfams | Extracts the drug enzymes polypeptides pfams element and return data as data frame. |
parse_drug_enzymes_polypeptides_synonyms | Extracts the drug enzymes polypeptides synonyms element and return data as data frame. |
parse_drug_enzymes_textbooks | Extracts the drug enzymes textbooks element and return data as data frame. |
parse_drug_experimental_properties | Extracts the drug experimental properties element and return data as data frame. |
parse_drug_external_identifiers | Extracts the drug external identifiers element and return data as data frame. |
parse_drug_external_links | Extracts the drug external links element and return data as data frame. |
parse_drug_food_interactions | Extracts the drug food interactions element and return data as data frame. |
parse_drug_groups | Extracts the drug groups element and return data as data frame. |
parse_drug_interactions | Extracts the drug interactions element and return data as data frame. |
parse_drug_links | Extracts the drug links element and return data as data frame. |
parse_drug_manufacturers | Extracts the drug manufacturers element and return data as data frame. |
parse_drug_mixtures | Extracts the drug mixtures element and return data as data frame. |
parse_drug_packagers | Extracts the drug packagers element and return data as data frame. |
parse_drug_patents | Extracts the drug patents element and return data as data frame. |
parse_drug_pathway | Extracts the drug pathway element and return data as data frame. |
parse_drug_pathway_drugs | Extracts the drug pathway drugs element and return data as data frame. |
parse_drug_pathway_enzyme | Extracts the drug pathway enzyme element and return data as data frame. |
parse_drug_pdb_entries | Extracts the drug pdb entries element and return data as data frame. |
parse_drug_prices | Extracts the drug prices element and return data as data frame. |
parse_drug_products | Extracts the drug products element and return data as data frame. |
parse_drug_reactions | Extracts the drug reactions element and return data as data frame. |
parse_drug_reactions_enzymes | Extracts the drug reactions enzymes element and return data as data frame. |
parse_drug_sequences | Extracts the drug sequences element and return data as data frame. |
parse_drug_snp_adverse_drug_reactions | Extracts the drug snp adverse drug reactions element and return data as data frame. |
parse_drug_snp_effects | Extracts the drug snp effects element and return data as data frame. |
parse_drug_synonyms | Extracts the drug synonyms element and return data as data frame. |
parse_drug_targets | Extracts the drug targets element and return data as data frame. |
parse_drug_targets_actions | Extracts the drug targets actions element and return data as data frame. |
parse_drug_targets_articles | Extracts the drug targets articles element and return data as data frame. |
parse_drug_targets_links | Extracts the drug targets links element and return data as data frame. |
parse_drug_targets_polypeptides | Extracts the drug targets polypeptides element and return data as data frame. |
parse_drug_targets_polypeptides_external_identifiers | Extracts the drug targets polypeptides external identifiers element and return data as data frame. |
parse_drug_targets_polypeptides_go_classifiers | Extracts the drug targets polypeptides go classifiers element and return data as data frame. |
parse_drug_targets_polypeptides_pfams | Extracts the drug targets polypeptides pfams element and return data as data frame. |
parse_drug_targets_polypeptides_synonyms | Extracts the drug targets polypeptides synonyms element and return data as data frame. |
parse_drug_targets_textbooks | Extracts the drug targets textbooks element and return data as data frame. |
parse_drug_transporters | Extracts the drug transporters element and return data as data frame. |
parse_drug_transporters_actions | Extracts the drug transporters actions element and return data as data frame. |
parse_drug_transporters_articles | Extracts the drug transporters articles element and return data as data frame. |
parse_drug_transporters_links | Extracts the drug transporters links element and return data as data frame. |
parse_drug_transporters_polypeptides | Extracts the drug transporters polypeptides element and return data as data frame. |
parse_drug_transporters_polypeptides_external_identifiers | Extracts the drug transporters polypeptides external identifiers element and return data as data frame. |
parse_drug_transporters_polypeptides_go_classifiers | Extracts the drug transporters polypeptides go classifiers element and return data as data frame. |
parse_drug_transporters_polypeptides_pfams | Extracts the drug transporters polypeptides pfams element and return data as data frame. |
parse_drug_transporters_polypeptides_synonyms | Extracts the drug transporters polypeptides synonyms element and return data as data frame. |
parse_drug_transporters_textbooks | Extracts the drug transporters textbooks element and return data as data frame. |