EBI Metagenomics Portal


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Documentation for package ‘ebimetagenomics’ version 0.6

Help Pages

analyseOtu Analysis of OTU count data
convertOtuTad Converts an OTU count data frame to a TAD data frame
getProjectsList Download the EMG projects list into a data frame
getProjectSummary Download an EMG project summary into a data frame
getRunOtu Downloads OTU count data associated with a EMG run
getSampleOtu Downloads and merges all of the OTU count data associated with a EMG sample
mergeOtu Merges two OTU count data data frames to produce a combined OTU count data data frame
plotOtu Plots OTU count data
projectRuns Find runs associated with an EMG project
projectSamples Find samples associated with an EMG project
read.otu.tsv Reads OTU count data associated with a EMG run
read.project.csv Read an EMG project summary into a data frame
runsBySample Find runs associated with a particular sample ID within an EMG project