Various Utilities for Microbial Genomics and Metagenomics


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Documentation for package ‘enveomics.R’ version 1.4.4

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enveomics.R-package Various Utilities for Microbial Genomics and Metagenomics
$-method ~~ Methods for Function '$' ~~
$-methods ~~ Methods for Function '$' ~~
enve.barplot enve barplot
enve.cliopts enve cliopts
enve.col.alpha enve col alpha
enve.col2alpha enve col2alpha
enve.df2dist enve df2dist
enve.df2dist.group enve df2dist group
enve.df2dist.list enve df2dist list
enve.GrowthCurve enve.GrowthCurve S4 class
enve.growthcurve enve growthcurve
enve.GrowthCurve-class enve.GrowthCurve S4 class
enve.prune.dist enve prune dist
enve.recplot enve recplot
enve.RecPlot2 enve.RecPlot2 S4 class
enve.recplot2 enve recplot2
enve.RecPlot2-class enve.RecPlot2 S4 class
enve.recplot2.ANIr enve recplot2 ANIr
enve.recplot2.changeCutoff enve recplot2 changeCutoff
enve.recplot2.compareIdentities enve recplot2 compareIdentities
enve.recplot2.coordinates enve recplot2 coordinates
enve.recplot2.corePeak enve recplot2 corePeak
enve.recplot2.extractWindows enve recplot2 extractWindows
enve.recplot2.findPeaks enve recplot2 findPeaks
enve.recplot2.findPeaks.em enve recplot2 findPeaks em
enve.recplot2.findPeaks.emauto enve recplot2 findPeaks emauto
enve.recplot2.findPeaks.mower enve recplot2 findPeaks mower
enve.recplot2.findPeaks.__emauto_one enve recplot2 findPeaks emauto one
enve.recplot2.findPeaks.__em_e enve recplot2 findPeaks em e
enve.recplot2.findPeaks.__em_m enve recplot2 findPeaks em m
enve.recplot2.findPeaks.__mower enve recplot2 findPeaks mower
enve.recplot2.findPeaks.__mow_one enve recplot2 findPeaks mow one
enve.RecPlot2.Peak enve.RecPlot2.Peak S4 class
enve.RecPlot2.Peak-class enve.RecPlot2.Peak S4 class
enve.recplot2.seqdepth enve recplot2 seqdepth
enve.recplot2.windowDepthThreshold enve recplot2 windowDepthThreshold
enve.recplot2.__counts enve recplot2 counts
enve.recplot2.__peakHist enve recplot2 peakHist
enve.recplot2.__whichClosestPeak enve recplot2 whichClosestPeak
enve.TRIBS enve.TRIBS S4 class
enve.tribs enve tribs
enve.TRIBS-class enve.TRIBS S4 class
enve.TRIBS.merge enve TRIBS merge
enve.tribs.test enve tribs test
enve.TRIBStest enve.TRIBStest S4 class
enve.TRIBStest-class enve.TRIBStest S4 class
enve.truncate enve truncate
enve.__prune.iter enve prune iter
enve.__prune.reduce enve prune reduce
enve.__tribs enve tribs
enveomics.R Various Utilities for Microbial Genomics and Metagenomics
growth.curves Bacterial growth curves for three Escherichia coli mutants
phyla.counts Counts of microbial phyla in four sites
plot.enve.GrowthCurve plot enve GrowthCurve
plot.enve.RecPlot2 plot enve RecPlot2
plot.enve.TRIBS plot enve TRIBS
plot.enve.TRIBStest plot enve TRIBStest
summary.enve.GrowthCurve summary enve GrowthCurve
summary.enve.TRIBS summary enve TRIBS
summary.enve.TRIBStest summary enve TRIBStest