Graphical Interaction Models


[Up] [Top]

Documentation for package ‘gRim’ version 0.2-0

Help Pages

backward Stepwise model selection in (graphical) interaction models
CGstats Mean, covariance and counts for grouped data
CGstats.data.frame Mean, covariance and counts for grouped data
CGstats_internal Mean, covariance and counts for grouped data
ciTest Generic function for conditional independence test
ciTest-array Test for conditional independence in a contingency table
ciTest-general Generic function for conditional independence test
ciTest.data.frame Generic function for conditional independence test
ciTest.list Generic function for conditional independence test
ciTest.table Generic function for conditional independence test
ciTest_df Test for conditional independence in a dataframe
ciTest_mvn Test for conditional independence in the multivariate normal distribution
ciTest_ordinal A function to compute Monte Carlo and asymptotic tests of conditional independence for ordinal and/or nominal variables.
ciTest_table Test for conditional independence in a contingency table
cmod Graphical Gaussian model
cModel-class Class '"dModel"'
coef.mModel Mixed interaction model.
coefficients.mModel Mixed interaction model.
dmod Log-linear model
dModel-class Class '"dModel"'
effloglin Fitting Log-Linear Models by Message Passing
extractAIC.iModel General functions related to iModels
fitted.dModel Log-linear model
formula.iModel General functions related to iModels
forward Stepwise model selection in (graphical) interaction models
getEdges Find edges in a graph and edges not in an undirected graph.
getEdges.graphNEL Find edges in a graph and edges not in an undirected graph.
getEdges.list Find edges in a graph and edges not in an undirected graph.
getEdges.matrix Find edges in a graph and edges not in an undirected graph.
getEdgesMAT Find edges in a graph and edges not in an undirected graph.
getInEdges Find edges in a graph and edges not in an undirected graph.
getInEdgesMAT Find edges in a graph and edges not in an undirected graph.
getOutEdges Find edges in a graph and edges not in an undirected graph.
getOutEdgesMAT Find edges in a graph and edges not in an undirected graph.
ggmfit Iterative proportional fitting of graphical Gaussian model
ggmfitr Iterative proportional fitting of graphical Gaussian model
ghk2phkParms Conversion between different parametrizations of mixed interaction models.
ghk2pmsParms Conversion between different parametrizations of mixed interaction models.
iModel-general General functions related to iModels
isDecomposable.dModel General functions related to iModels
isGraphical.dModel General functions related to iModels
logLik.iModel General functions related to iModels
loglinDecDim Return the dimension of a log-linear model
loglinGenDim Return the dimension of a log-linear model
mmod Mixed interaction model.
mModel-class Class '"dModel"'
mmod_dimension Mixed interaction model.
modelProperties General functions related to iModels
modelProperties.dModel General functions related to iModels
modify_glist Modify generating class for a graphical/hierarchical model
phk2ghkParms Conversion between different parametrizations of mixed interaction models.
phk2pmsParms Conversion between different parametrizations of mixed interaction models.
pms2ghkParms Conversion between different parametrizations of mixed interaction models.
pms2phkParms Conversion between different parametrizations of mixed interaction models.
print.CGstats Mean, covariance and counts for grouped data
print.citest Generic function for conditional independence test
print.dModel Log-linear model
print.iModelsummary General functions related to iModels
print.mModel Mixed interaction model.
print.testadd Test addition of edge to graphical model
print.testdelete Test deletion of edge from an interaction model
residuals.dModel Log-linear model
stepwise Stepwise model selection in (graphical) interaction models
stepwise.iModel Stepwise model selection in (graphical) interaction models
summary.citest Generic function for conditional independence test
summary.iModel General functions related to iModels
summary.mModel Mixed interaction model.
terms.iModel General functions related to iModels
testadd Test addition of edge to graphical model
testadd.iModel Test addition of edge to graphical model
testadd.mModel Test addition of edge to graphical model
testdelete Test deletion of edge from an interaction model
testdelete.iModel Test deletion of edge from an interaction model
testdelete.mModel Test deletion of edge from an interaction model
testEdges Test edges in graphical models with p-value/AIC value
testEdges.iModel Test edges in graphical models with p-value/AIC value
testInEdges Test edges in graphical models with p-value/AIC value
testOutEdges Test edges in graphical models with p-value/AIC value
triangulate.dModel Log-linear model