Analysis and Visualization Tools for Genetic Barcode Data


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Documentation for package ‘genBaRcode’ version 1.1.0

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asBCdat Data Type Conversion
BCdat BCdat class
BCdat-class BCdat class
BC_dat Barcode distribution of an example experiment.
checkBarcodeData checkBarcodeData
createGDF Creating a gdf File
errorCorrection Error Correction
errorCorrection_multiple Error Correction for multiple objects
extractBarcodes Barcode extraction
extractBarcodes_multiple Barcode extraction for multiple backbones
extractBarcodes_single Barcode extraction for a single backbone
genBaRcode_app Shiny App
generateKirchenplot Plotting a Kirchenplot
generateTimeSeriesData Generating Time Series Data Object
getBackbone Predefined Barcode Backbone Sequences
ggplotDistanceGraph Plotting a Distance Network
hybridsIdentification Identifies hybrid barcodes
ori_BCs List of Barcodes.
plotClusterGgTree Plotting a Cluster ggTree
plotClusterTree Plotting a Cluster Tree
plotDistanceIgraph Plotting a Distance Network
plotDistanceVisNetwork Plotting a Distance Network
plotNucFrequency Plotting Nucleotide Frequency
plotQualityScoreDis Plotting Quality Score Distribution
plotQualityScorePerCycle Plotting Quality Score per Cycle
plotReadFrequencies Plotting a Barplot
plotSeqLogo Plots a sequence logo
plotTimeSeries Plotting Time Series Data
plotVennDiagramm Plotting a VennDiagram
prepareDatObject Data Object Preparation
processingRawData Data processing
qualityFiltering Quality Filtering
readBCdat Data Input