ktspair-package |
Computation of the k-TSP |
AUC.calc |
Compute the AUC |
bootstrap.graphic.ktsp |
Graphical display of the bootstrap procedure |
bootstrap.ktsp |
Bootstrap procedure for the k-TSP |
cv |
Crossvalidation for the parameter k |
cv2 |
Crossvalidation with chosen pairs of genes |
dat |
Simulated gene expressions of individuals. |
eSet |
Simulated gene expressions of individuals. |
grp |
Group of the individuals. |
kts.pair |
Calculation of the k top scoring pairs. |
ktspair |
Computation of the k-TSP |
ktspcalc |
Compute the k top scoring pairs based on a gene expression matrix and a group indicator vector. |
ktspcalc2 |
The k-TSP with chosen pairs of genes |
ktspdata |
Simulated dataset of gene expressions in a matrix form. |
ktspplot |
Graphical representation of ktsp objects |
make.consecutive.int |
Transform the group vector into a binary vector |
ordertsp |
Ordering of the pairs of genes |
plot.ktsp |
Graphical representation of ktsp objects |
predict.ktsp |
Prediction using a ktsp object |
print.ktsp |
Print the results of the k-TSP |
rank_na |
Rank the gene expression and Replace NA |
ROC.graphic.ktsp |
Graphical display of the ROC curve |
ROC.offset |
ROC curve based on the offset method for k-TSP method |
ROC.voting |
ROC curve based on the voting system for k-TSP method |
summary.ktsp |
Summary of ktsp object |