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| ktspair-package | Computation of the k-TSP |
| AUC.calc | Compute the AUC |
| bootstrap.graphic.ktsp | Graphical display of the bootstrap procedure |
| bootstrap.ktsp | Bootstrap procedure for the k-TSP |
| cv | Crossvalidation for the parameter k |
| cv2 | Crossvalidation with chosen pairs of genes |
| dat | Simulated gene expressions of individuals. |
| eSet | Simulated gene expressions of individuals. |
| grp | Group of the individuals. |
| kts.pair | Calculation of the k top scoring pairs. |
| ktspair | Computation of the k-TSP |
| ktspcalc | Compute the k top scoring pairs based on a gene expression matrix and a group indicator vector. |
| ktspcalc2 | The k-TSP with chosen pairs of genes |
| ktspdata | Simulated dataset of gene expressions in a matrix form. |
| ktspplot | Graphical representation of ktsp objects |
| make.consecutive.int | Transform the group vector into a binary vector |
| ordertsp | Ordering of the pairs of genes |
| plot.ktsp | Graphical representation of ktsp objects |
| predict.ktsp | Prediction using a ktsp object |
| print.ktsp | Print the results of the k-TSP |
| rank_na | Rank the gene expression and Replace NA |
| ROC.graphic.ktsp | Graphical display of the ROC curve |
| ROC.offset | ROC curve based on the offset method for k-TSP method |
| ROC.voting | ROC curve based on the voting system for k-TSP method |
| summary.ktsp | Summary of ktsp object |