Network-Based Gene Set Analysis


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Documentation for package ‘netgsa’ version 3.0

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netgsa-package Network-Based Gene Set Analysis
bic.netEst.undir Bayesian information criterion to select the tuning parameters for 'netEst.undir'
edgelist An example edge list
edgelist2adj Construct an adjacency matrix from an edge list
netEst.dir Constrained estimation of directed networks
netEst.undir Constrained estimation of undirected networks
NetGSA Network-based Gene Set Analysis
netgsaex2 Toy example for using 'NetGSA' on a two-class test with undirected networks
netgsaex3 Toy example for using 'NetGSA' on a three-class test with undirected networks
netgsaexDAG Toy example for using 'NetGSA' on a two-class test with directed acyclic graphs
nonedgelist An example for not-an-edge list