onemap-package |
Software for constructing genetic maps |
add.marker |
Add or Drop Markers From a Sequence |
add_drop |
Add or Drop Markers From a Sequence |
compare |
Compare all possible orders (exhaustive search) for a given sequence of markers |
def.rf.3pts |
Three-point analysis of genetic markers |
draw.map |
Draw a genetic map |
drop.marker |
Add or Drop Markers From a Sequence |
example.out |
Data from a full-sib family derived from two outbred parents |
fake.bc.onemap |
Simulated data from a backcross population |
fake.f2.onemap |
Simulated data from a F2 population |
group |
Assign markers to linkage groups |
haldane |
Mapping functions Haldane and Kosambi |
kosambi |
Mapping functions Haldane and Kosambi |
make.seq |
Create a sequence of markers |
map |
Construct the linkage map for a sequence of markers |
map_func |
Mapping functions Haldane and Kosambi |
marker.type |
Informs the segregation patterns of markers |
onemap |
Software for constructing genetic maps |
order.seq |
Search for the best order of markers combining compare and try.seq functions |
print.group |
Assign markers to linkage groups |
print.rf.2pts |
Two-point analysis between genetic markers |
print.try |
Try to map a marker into every possible position between markers |
rcd |
Rapid Chain Delineation |
read.mapmaker |
Read data from a Mapmaker raw file |
read.outcross |
Read data from a segregating full-sib population |
record |
Recombination Counting and Ordering |
rf.2pts |
Two-point analysis between genetic markers |
rf.graph.table |
Plots pairwise recombination fractions and LOD Scores using a color scale. |
ripple.seq |
Compares and displays plausible alternative orders for a given linkage group |
seriation |
Seriation |
set.map.fun |
Defines the default mapping function |
try.seq |
Try to map a marker into every possible position between markers |
ug |
Unidirectional Growth |
write.map |
Write a genetic map to a file |