Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

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Documentation for package ‘ouch’ version 2.11-1

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ouch-package Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
anolis.ssd Greater Antillean anolis lizard sexual size dimorphism data.
ape2ouch Convert an "ape" tree to an "ouch" tree.
as-method Methods of the "hansentree" class
bimac Anolis bimaculatus lizard size data.
bootstrap Methods of the "hansentree" class
bootstrap-browntree Fitted phylogenetic Brownian motion model
bootstrap-hansentree Methods of the "hansentree" class
bootstrap-method Fitted phylogenetic Brownian motion model
bootstrap-method Methods of the "hansentree" class
brown Fit a Brownian-motion model of evolution along a phylogenetic tree
browntree Fitted phylogenetic Brownian motion model
browntree-class Fitted phylogenetic Brownian motion model
coef-browntree Fitted phylogenetic Brownian motion model
coef-hansentree Methods of the "hansentree" class
coef-method Fitted phylogenetic Brownian motion model
coef-method Methods of the "hansentree" class
coerce-method Fitted phylogenetic Brownian motion model
coerce-method Methods of the "hansentree" class
coerce-method Phylogenetic tree object in 'ouch' format.
hansen Hansen model of evolution along a phylogenetic tree
hansentree hansen tree object
hansentree-class hansen tree object
hansentree-methods Methods of the "hansentree" class
logLik-browntree Fitted phylogenetic Brownian motion model
logLik-hansentree Methods of the "hansentree" class
logLik-method Fitted phylogenetic Brownian motion model
logLik-method Methods of the "hansentree" class
ouchtree Phylogenetic tree object in 'ouch' format.
ouchtree-class Phylogenetic tree object in 'ouch' format.
paint Painting selective regimes on a phylogenetic tree.
plot-browntree Fitted phylogenetic Brownian motion model
plot-hansentree Methods of the "hansentree" class
plot-method Fitted phylogenetic Brownian motion model
plot-method Methods of the "hansentree" class
plot-method Phylogenetic tree object in 'ouch' format.
plot-ouchtree Phylogenetic tree object in 'ouch' format.
print-browntree Fitted phylogenetic Brownian motion model
print-hansentree Methods of the "hansentree" class
print-method Fitted phylogenetic Brownian motion model
print-method Methods of the "hansentree" class
print-method Phylogenetic tree object in 'ouch' format.
print-ouchtree Phylogenetic tree object in 'ouch' format.
show-browntree Fitted phylogenetic Brownian motion model
show-hansentree Methods of the "hansentree" class
show-method Fitted phylogenetic Brownian motion model
show-method Methods of the "hansentree" class
show-method Phylogenetic tree object in 'ouch' format.
show-ouchtree Phylogenetic tree object in 'ouch' format.
simulate-browntree Fitted phylogenetic Brownian motion model
simulate-hansentree Methods of the "hansentree" class
simulate-method Fitted phylogenetic Brownian motion model
simulate-method Methods of the "hansentree" class
summary-browntree Fitted phylogenetic Brownian motion model
summary-hansentree Methods of the "hansentree" class
summary-method Fitted phylogenetic Brownian motion model
summary-method Methods of the "hansentree" class
update-browntree Fitted phylogenetic Brownian motion model
update-hansentree Methods of the "hansentree" class
update-method Fitted phylogenetic Brownian motion model
update-method Methods of the "hansentree" class