Fast Principal Component Analysis for Outlier Detection


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Documentation for package ‘pcadapt’ version 4.1.0

Help Pages

bed2matrix Convert a bed to a matrix
get.pc Get the principal component the most associated with a genetic marker
get_statistics pcadapt statistics
pcadapt Principal Component Analysis for outlier detection
pcadapt.pcadapt_bed Principal Component Analysis for outlier detection
pcadapt.pcadapt_matrix Principal Component Analysis for outlier detection
pcadapt.pcadapt_pool Principal Component Analysis for outlier detection
plot.pcadapt pcadapt visualization tool
print_convert Summary
read.pcadapt File Converter
run.pcadapt Shiny app
vcf2pcadapt vcfR-based converter
writeBed Write PLINK files