popkin-package |
A package for estimating kinship and FST under arbitrary population structure |
fst |
Extract FST from a population-level kinship matrix or vector of inbreeding coefficients |
inbr |
Extract inbreeding coefficients from a kinship matrix |
inbrDiag |
Replace kinship diagonal with inbreeding coefficients |
neff |
Calculates the effective sample size of the data |
plotPopkin |
Visualize one or more kinship matrices |
popkin |
Estimate kinship from a genotype matrix and subpopulation assignments |
pwfst |
Estimate the individual-level pairwise FST matrix |
rescalePopkin |
Rescale kinship matrix to set a given kinship value to zero. |
weightsSubpops |
Get weights for individuals that balance subpopulations |
_PACKAGE |
A package for estimating kinship and FST under arbitrary population structure |