Create Useful Summaries of the Portal Data


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Documentation for package ‘portalr’ version 0.2.2

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portalr-package Creates summaries of the Portal data
abundance Generate summaries of Portal rodent data
add_seasons Add Seasons
bait_presence_absence Ant Bait Presence Absence
biomass Generate summaries of Portal rodent data
check_for_newer_data Check for latest version of data files
clean_plant_data Do basic cleaning of Portal plant data
clean_rodent_data Do basic cleaning of Portal rodent data
colony_presence_absence Ant Colony Presence Absence
download_observations Download the PortalData repo
energy Generate summaries of Portal rodent data
fcast_ndvi Forecast ndvi using a seasonal auto ARIMA
fill_missing_ndvi Fill in historic ndvi data to the complete timeseries being fit
find_incomplete_censuses Period code for incomplete censuses
get_data_versions get version and download info for PortalData
get_future_moons Get future moon dates
load_ant_data Read in the Portal data files
load_datafile read in a raw datafile from the downloaded data or the GitHub repo
load_plant_data Read in the Portal data files
load_rodent_data Read in the Portal data files
load_trapping_data Read in the Portal data files
make_timeseries Makes a standardized monthly time series for Portal rodents
ndvi NDVI by calendar month or lunar month
plant_abundance Generate summaries of Portal plant data
portalr Creates summaries of the Portal data
shrub_cover Generate percent cover from Portal plant transect data
summarise_individual_rodents Return cleaned Portal rodent individual data
summarise_plant_data Generate summaries of Portal plant data
summarise_rodent_data Generate summaries of Portal rodent data
summarize_individual_rodents Return cleaned Portal rodent individual data
summarize_plant_data Generate summaries of Portal plant data
summarize_rodent_data Generate summaries of Portal rodent data
weather Weather by day, calendar month, or lunar month
yearly Add Seasons