Range Ancestral State Estimation for Phylogeography and Comparative Analyses


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Documentation for package ‘rase’ version 0.3-3

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rase-package Range Ancestral State Estimation
add.dens Plot the Posterior Density for each Ancestor in 3D Space
add.polygons Plot the Distributions for the Phylogenetic Tips in 3D
bm_ase Bayesian Ancestral State Estimation with Points
data.for.3d Transform Output for 3D Plotting
mcmc Psophia Data Used for rase Package
name.poly Name & Order Polygons According to the Phylogeny
phylo.3d Plots a Phylogenic Tree in 3D
point.like.bm n-dimensional Maximum Likelihood of Point Brownian Motion
psophia_poly Psophia Data Used for rase Package
psophia_shp Psophia Data Used for rase Package
psophia_tree Psophia Data Used for rase Package
ranges.like.bm n-dimensional Maximumn Likelihood of Range Brownian Motion
rase Bayesian Range Ancestral State Estimation of Polygons
rase.slice Ancestral State Estimation At Any Given Time Slice
shape.to.rase Transform a Shapefile into 'owin.object' Format
tree.slice Identify Tree Branches That Intersect With a Given Time Slice.