Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS


[Up] [Top]

Documentation for package ‘runjags’ version 2.0.4-2

Help Pages

A C D E F I L M N P R S T U W X

runjags-package Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS

-- A --

add.summary Summary statistics and plot methods for runjags class objects
as.jags The runjags class and available S3 methods
as.jags.runjags The runjags class and available S3 methods
as.mcmc.list.runjags The runjags class and available S3 methods
as.mcmc.runjags The runjags class and available S3 methods
as.runjags The runjags class and available S3 methods
as.runjags.jags The runjags class and available S3 methods
ask Obtain Input from User With Error Handling
autoextend.JAGS Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics
autoextend.jags Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics
autorun.JAGS Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics
autorun.jags Run or extend a user-specified Bayesian MCMC model in JAGS with automatically calculated run-length and convergence diagnostics

-- C --

cleanup.JAGS The runjags class and available S3 methods
cleanup.jags The runjags class and available S3 methods
combine.JAGS Combining and dividing runjags and MCMC objects
combine.jags Combining and dividing runjags and MCMC objects
combine.MCMC Combining and dividing runjags and MCMC objects
combine.mcmc Combining and dividing runjags and MCMC objects
contrasts.MCMC Mutate functions to be used with runjags summary methods
contrasts.mcmc Mutate functions to be used with runjags summary methods

-- D --

dic.runjags Extract peripheral information from runjags objects
divide.JAGS Combining and dividing runjags and MCMC objects
divide.jags Combining and dividing runjags and MCMC objects
drop.k Drop-k and simulated dataset studies using JAGS
drop.k.JAGS Drop-k and simulated dataset studies using JAGS
drop.k.jags Drop-k and simulated dataset studies using JAGS
dump.format Conversion Between a Named List and a Character String in the R Dump Format

-- E --

extend.JAGS Run or extend a user-specified Bayesian MCMC model in JAGS from within R
extend.jags Run or extend a user-specified Bayesian MCMC model in JAGS from within R
extract Extract peripheral information from runjags objects
extract.jags Extract peripheral information from runjags objects
extract.runjags Extract peripheral information from runjags objects

-- F --

failed.JAGS The runjags class and available S3 methods
failed.jags The runjags class and available S3 methods
failedjags The runjags class and available S3 methods
findJAGS Attempt to Locate a JAGS Install
findjags Attempt to Locate a JAGS Install
fitted.runjags The runjags class and available S3 methods

-- I --

is.runjags The runjags class and available S3 methods

-- L --

list.format Conversion Between a Named List and a Character String in the R Dump Format
load.runJAGSmodule Load the internal JAGS module provided by runjags
load.runjagsmodule Load the internal JAGS module provided by runjags

-- M --

mutate.functions Mutate functions to be used with runjags summary methods

-- N --

new_unique Create a Unique Filename

-- P --

plot.runjags Summary statistics and plot methods for runjags class objects
plot.runjagsplots Summary statistics and plot methods for runjags class objects
plot.runjagsstudy Print methods for runjags helper classes
prec2sd Mutate functions to be used with runjags summary methods
predict.runjags The runjags class and available S3 methods
print.crosscorrstats Print methods for runjags helper classes
print.dicstats Print methods for runjags helper classes
print.failedjags Print methods for runjags helper classes
print.gelman.with.target Print methods for runjags helper classes
print.gelmanwithtarget Print methods for runjags helper classes
print.mcsestats Print methods for runjags helper classes
print.rjagsoutput Print methods for runjags helper classes
print.runjags Summary statistics and plot methods for runjags class objects
print.runjagsbginfo Print methods for runjags helper classes
print.runjagsdata Print methods for runjags helper classes
print.runjagsinits Print methods for runjags helper classes
print.runjagsmodel Print methods for runjags helper classes
print.runjagsoutput Print methods for runjags helper classes
print.runjagsplots Summary statistics and plot methods for runjags class objects
print.runjagsstudy Print methods for runjags helper classes

-- R --

read.JAGSfile Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile
read.jagsfile Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile
read.WinBUGS Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile
read.winbugs Extract Any Models, Data, Monitored Variables or Initial Values As Character Vectors from a JAGS or WinBUGS Format Textfile
residuals.runjags The runjags class and available S3 methods
results.JAGS Importing of saved JAGS simulations with partial error recovery
results.jags Importing of saved JAGS simulations with partial error recovery
run.JAGS Run or extend a user-specified Bayesian MCMC model in JAGS from within R
run.jags Run or extend a user-specified Bayesian MCMC model in JAGS from within R
run.JAGS.study Drop-k and simulated dataset studies using JAGS
run.jags.study Drop-k and simulated dataset studies using JAGS
runjags Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS
runjags-class The runjags class and available S3 methods
runJAGS.getOption Options for the runjags package
runjags.getOption Options for the runjags package
runJAGS.options Options for the runjags package
runjags.options Options for the runjags package
runjags.printmethods Print methods for runjags helper classes
runjagsclass The runjags class and available S3 methods
runjagspackage Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS
runjagsstudy-class The runjags class and available S3 methods
runjagsstudyclass The runjags class and available S3 methods

-- S --

summary.runjags Summary statistics and plot methods for runjags class objects
summary.runjagsstudy Print methods for runjags helper classes

-- T --

template.JAGS Generate a generalised linear mixed model (GLMM) specification in JAGS
template.jags Generate a generalised linear mixed model (GLMM) specification in JAGS
testJAGS Analyse the System to Check That JAGS Is Installed
testjags Analyse the System to Check That JAGS Is Installed
timestring Calculate the Elapsed Time in Sensible Units

-- U --

unload.runJAGSmodule Load the internal JAGS module provided by runjags
unload.runjagsmodule Load the internal JAGS module provided by runjags

-- W --

write.JAGSfile Write a complete JAGS model to a text file
write.jagsfile Write a complete JAGS model to a text file

-- X --

xapply Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.autoextend.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.autoextend.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.autorun.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.autorun.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.autorun.JAGSfile Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.autorun.jagsfile Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.delete Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.extend.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.extend.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.jobs Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.results Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.results.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.results.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.run Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.run.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.run.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.run.JAGSfile Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.run.jagsfile Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.submit Remote execution of user-specified R functions on Apple Xgrid distributed computing clusters
xgrid.submit.JAGS Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.submit.jags Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.submit.JAGSfile Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R
xgrid.submit.jagsfile Run a JAGS Model using an Apple Xgrid distributed computing cluster from Within R