Single Channel Bursts Analysis


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Documentation for package ‘scbursts’ version 1.4

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bursts.defined_by_tcrit Divide a recording into bursts defined by a critical time.
bursts.get_gaps Get the gaps between bursts.
bursts.pcloseds Return pcloseds of every burst.
bursts.popens Return popens of every burst.
bursts.recombine Combine bursts into one recording (with obvious spaces between them).
bursts.remove_first_and_last Remove the first and last burst from the list.
bursts.select From a list of bursts, extract those that interest you by passing a selecting function.
bursts.sort Order a list of bursts by some function. For instance, popen.
bursts.space_out Artificially add amount of time between bursts (in absence of recording information).
bursts.start_times_update (DON'T USE THIS) Fix meta-data of bursts.
clampfit.read Read a .xlsx file output from clampfit
cplot.log_root_axes Add log-root axes to histogram plot
cplot.pclosed_ts Plot Time Series (ts) of P(Closed).
cplot.popen_ts Plot Time Series (ts) of P(Open).
dwt.read Read a .dwt file.
dwt.write Write a dwt file to disk. Writes DOS line endings. Dwells are in milliseconds
evt.extract_header Extract header from evt file.
evt.from_dwells Converts dwell durations to absolute transition times.
evt.read Read a .evt file to a table. Times are in seconds
evt.to_dwells Calculate pulse lengths. Converts transition times to dwell durations.
evt.write Write bursts to a .evt file.
hst.extract_header Extract header from hst file.
hst.read Read a MIL ".hst" file to a table.
hst.write Write bursts to a log10(ms)-sqrt(Frequency) .hst file from open and closed tables.
risetime.correct_gaussian Undo the effect of the gaussian filter.
scan.read Read a scan results text file. scan.read returns a 1 segment list Reads in scan results and puts them in the same format as the output of dwt.read. See 'dwt', and 'segment' for more information.
segment.closed_dwells Extract closed dwells.
segment.count_closed Extract number of closed dwells.
segment.count_dwells Extract number of dwells in segment.
segment.count_open Extract number of open dwells.
segment.create Create a "segment" object
segment.duration Get duration of a segment.
segment.name Extract name from segment.
segment.open_dwells Extract open dwells.
segment.pclosed Calculate empirical P(Closed) of a segment.
segment.popen Calculate empirical P(Open) of a segment.
segment.seg Extract segment number from segment.
segment.start_time Extract start_time from segment.
segment.verify Detect misrecorded data.
util.basename Remove suffix and path from filename.