Test and Optimise Sampling Designs Based on Plume Simulations


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Documentation for package ‘sensors4plumes’ version 0.9.3

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A B C D E F I K L M N O P R S W

sensors4plumes-package Test and optimise sampling designs based on plume simulations

-- A --

absError Compare original and interpolated maps point-wise
absErrorMap Compare original and interpolated maps point-wise
areaSDF Areas of elements of SpatialDataFrame objects
areaSDF-method Areas of elements of SpatialDataFrame objects
areaSDF.SpatialIndexDataFrame Areas of elements of SpatialDataFrame objects
areaSDF.SpatialLinesDataFrame Areas of elements of SpatialDataFrame objects
areaSDF.SpatialPixelsDataFrame Areas of elements of SpatialDataFrame objects
areaSDF.SpatialPointsDataFrame Areas of elements of SpatialDataFrame objects
areaSDF.SpatialPolygonsDataFrame Areas of elements of SpatialDataFrame objects
areaSDF.SpatialPolygridDataFrame Areas of elements of SpatialDataFrame objects

-- B --

bbox-method Class "SpatialDataFrame"
bbox-method Class "SpatialIndexDataFrame"
bbox-method Class "SpatialPolygridDataFrame"

-- C --

cbind.SpatialIndexDataFrame Class "SpatialIndexDataFrame"
cbind.SpatialPolygridDataFrame Class "SpatialPolygridDataFrame"
cbindSimulations Combine plumes of Simulations objects with coinciding parameters
changeSimulationsPath Reset file paths in Simulations objects
coerce-method Class "Simulations"
coerce-method Class "SpatialIndexDataFrame"
coerce-method Class "SpatialPolygridDataFrame"
coordinates-method Class "SpatialDataFrame"
coordinates-method Class "SpatialIndexDataFrame"
coordinates-method Class "SpatialPolygridDataFrame"
copySimulations Copy Simulations (including raster files)

-- D --

delineationError Compare original and interpolated maps point-wise
delineationErrorMap Compare original and interpolated maps point-wise

-- E --

earlyDetection Cost functions by plume-wise summary of values at locations
extractSpatialDataFrame Extract some values of Simulations to a SpatialDataFrame with the same spatial properties.

-- F --

fitMedianVariogram Interpolate many maps at once - even if they do not fit into memory

-- I --

idw0z Interpolate many maps at once - even if they do not fit into memory
interpolate Interpolate many maps at once - even if they do not fit into memory
interpolationError Interpolate many maps at once, compare them to the original and determine a global error
interpolationErrorFunctions Compare original and interpolated maps point-wise
is.SpatialDataFrame Class "SpatialDataFrame"

-- K --

krigingVariance Cost functions dependent only on sensor locations

-- L --

length-method Class "SpatialDataFrame"
length-method Class "SpatialIndexDataFrame"
length-method Class "SpatialPolygridDataFrame"
loadSimulations Load values from raster or text files into Simulations objects

-- M --

measurementsResult General cost function by plume-wise summary of values at locations
measurementsResultFunctions Cost functions by plume-wise summary of values at locations
medianVariogram Variogram of radioactivePlumes
minimalDistance Cost functions dependent only on sensor locations
multipleDetection Cost functions by plume-wise summary of values at locations

-- N --

nKinds Class "Simulations"
nKinds-method Class "Simulations"
nKinds.Simulations Class "Simulations"
nLocations Class "Simulations"
nLocations-method Class "Simulations"
nLocations.Simulations Class "Simulations"
nPlumes Class "Simulations"
nPlumes-method Class "Simulations"
nPlumes.Simulations Class "Simulations"
numberPenalty Optimisation of sensor locations by a binary genetic algorithm

-- O --

optimisationCurve Plot Optimisation Curve
optimiseSD (Spatial) optimisation of sampling designs
optimiseSD_genetic Optimisation of sensor locations by a binary genetic algorithm
optimiseSD_global Derive one or all globally optimal sampling designs for plume detection
optimiseSD_greedy Greedy optimisation algorithm
optimiseSD_manual Plot cost map for interactive adding and deleting of sensors
optimiseSD_ssa Spatial Simulated Annealing optimisation algorithm

-- P --

plot Plot overview of 'simulations'.
plot.Simulations Plot overview of 'simulations'.
plotSD Plot sampling designs and related cost maps
points2polygrid Turn points (and data) into a SpatialPolygridDataFrame
polygrid2grid Coerce SpatialPolygridDataFrame into SpatialGridDataFrame and geoTiff file
proj4string-method Class "SpatialDataFrame"
proj4string-method Class "SpatialIndexDataFrame"
proj4string-method Class "SpatialPolygridDataFrame"

-- R --

radioactivePlumes Simulations of radioactive plumes
rbind.SpatialIndexDataFrame Class "SpatialIndexDataFrame"
replaceDefault Replace default values in functions and check parameter list

-- S --

SDF2simulations Turn a SpatialDataFrame into Simulations.
SDgenetic Optimised sampling designs
SDglobal Optimised sampling designs
SDgreedy Optimised sampling designs
SDLonLat Transform locations of simulations into longitude latitude coordinates
SDmanual Optimised sampling designs
SDssa Optimised sampling designs
sensors4plumes Test and optimise sampling designs based on plume simulations
similaritySD Determine (spatial) similarity between sampling designs
Simulations Class "Simulations"
Simulations-class Class "Simulations"
simulationsApply Apply functions value-wise, location-wise, or plume-wise to Simulations
SimulationsSmall Artificial, small test data.
SIndexDF Small artificial test data
singleDetection Cost functions by plume-wise summary of values at locations
SLinesDF Small artificial test data
SpatialDataFrame Class "SpatialDataFrame"
SpatialDataFrame-class Class "SpatialDataFrame"
SpatialIndexDataFrame Class "SpatialIndexDataFrame"
SpatialIndexDataFrame-class Class "SpatialIndexDataFrame"
SpatialIndexDataFrame-method Class "SpatialIndexDataFrame"
SpatialPolygridDataFrame Class "SpatialPolygridDataFrame"
SpatialPolygridDataFrame-class Class "SpatialPolygridDataFrame"
SpatialPolygridDataFrame-method Class "SpatialPolygridDataFrame"
spatialSpread Cost function based on sensor locations only
SPixelsDF Small artificial test data
SPointsDF Small artificial test data
SPolygonsDF Small artificial test data
SPolygridDF Small artificial test data
spplot-method Class "SpatialDataFrame"
spplot-method Class "SpatialIndexDataFrame"
spplot-method Class "SpatialPolygridDataFrame"
spplotLog Plot methods for spatial data with logarithmic scale
subset Subsetting Simulations
subset.Simulations Subsetting Simulations
subsetSDF Subsetting objects of class SpatialDataFrame
subsetSDF-method Subsetting objects of class SpatialDataFrame
subsetSDF-method Subsetting objects of class SpatialIndexDataFrame
subsetSDF-method Subsetting objects of class SpatialPolygridDataFrame
subsetSDF.SpatialIndexDataFrame Subsetting objects of class SpatialIndexDataFrame
subsetSDF.SpatialLinesDataFrame Subsetting objects of class SpatialDataFrame
subsetSDF.SpatialPixelsDataFrame Subsetting objects of class SpatialDataFrame
subsetSDF.SpatialPointsDataFrame Subsetting objects of class SpatialDataFrame
subsetSDF.SpatialPolygonsDataFrame Subsetting objects of class SpatialDataFrame
subsetSDF.SpatialPolygridDataFrame Subsetting objects of class SpatialPolygridDataFrame
summaryLocations Summarise values of Simulations by locations
summaryPlumes Summarise values of Simulations by plumes

-- W --

weightedMean Summarise values of Simulations by plumes