Statistical Modeling of Animal Movements


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Documentation for package ‘smam’ version 0.4.0

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smam-package smam: Statistical Modeling of Animal Movements
dtm Density for Time Spent in Moving or Resting
dtr Density for Time Spent in Moving or Resting
fitBMME Fit a Brownian Motion with Measurement Error
fitBmme Fit a Brownian Motion with Measurement Error
fitMovRes Fit a Moving-Resting Model with Embedded Brownian Motion
fitMR Fit a Moving-Resting Model with Embedded Brownian Motion
fitMRH Fit a Moving-Resting-Handling Model with Embedded Brownian Motion
fitPartialViterbiMR Estimation of states at each time point with Moving-Resting Process
fitPartialViterbiMRH Estimation of states at each time point with Moving-Resting-Handling Process
fitStateMR Estimation of states at each time point with Moving-Resting Process
fitStateMRH Estimation of states at each time point with Moving-Resting-Handling Process
fitViterbiMR Estimation of states at each time point with Moving-Resting Process
fitViterbiMRH Estimation of states at each time point with Moving-Resting-Handling Process
integr.control Auxiliary for Controlling Numerical Integration
rBMME Sampling from Brown Motion with Measurement Error
rBmme Sampling from Brown Motion with Measurement Error
rMovRes Sampling from a Moving-Resting Process with Embedded Brownian Motion
rMR Sampling from a Moving-Resting Process with Embedded Brownian Motion
rMRH Sampling from a Moving-Resting-Handling Process with Embedded Brownian Motion
seasonFilter Subsetting data during given season for each year (seasonal analysis toolbox)
smam smam: Statistical Modeling of Animal Movements
transfData Transfer raw dataset to the standard dataset (seasonal analysis toolbox)