Handling Taxonomic Lists


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Documentation for package ‘taxlist’ version 0.1.6

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taxlist-package Handling Taxonomic Lists
$-method Extract or Replace Parts of taxlist Objects
$<- Extract or Replace Parts of taxlist Objects
$<--method Extract or Replace Parts of taxlist Objects
accepted_name Manage Accepted Names, Synonyms and Basionyms
accepted_name-method Manage Accepted Names, Synonyms and Basionyms
accepted_name<- Manage Accepted Names, Synonyms and Basionyms
accepted_name<--method Manage Accepted Names, Synonyms and Basionyms
add_concept Retrieve or replace slot taxonRelations in taxlist objects
add_concept-method Retrieve or replace slot taxonRelations in taxlist objects
add_level Deprecated Functions
add_parent Deprecated Functions
add_synonym Handle Information on Taxon Usage Names
add_synonym-method Handle Information on Taxon Usage Names
add_trait Deprecated Functions
add_view Management of concept views in taxonomic lists.
add_view-method Management of concept views in taxonomic lists.
as.list Coerce an S4 Object to a List
as.list-method Coerce an S4 Object to a List
backup_object Make and load Backups of R Objects
basionym Manage Accepted Names, Synonyms and Basionyms
basionym-method Manage Accepted Names, Synonyms and Basionyms
basionym<- Manage Accepted Names, Synonyms and Basionyms
basionym<--method Manage Accepted Names, Synonyms and Basionyms
change_cocept Merge Concepts
change_concept<- Merge Concepts
change_concept<--method Merge Concepts
clean Clean Orphaned Records
clean-method Clean Orphaned Records
clean_strings Cleaning Character Strings
clean_strings-method Cleaning Character Strings
count_taxa Count taxa within a taxlist object
count_taxa-method Count taxa within a taxlist object
delete_name Handle Information on Taxon Usage Names
delete_name-method Handle Information on Taxon Usage Names
df2taxlist Convert Data Frames into taxlist Objects
df2taxlist-method Convert Data Frames into taxlist Objects
dissect_name Dissect Scientific Names into their Elements
Easplist List of Vascular Plants from East Africa
Easplist-data List of Vascular Plants from East Africa
Extract Extract or Replace Parts of taxlist Objects
get_children Retrieve Children or Parents of Taxon Concepts
get_children-method Retrieve Children or Parents of Taxon Concepts
get_parents Retrieve Children or Parents of Taxon Concepts
get_parents-method Retrieve Children or Parents of Taxon Concepts
levels Set and Retrieves Hierarchical Levels
levels-method Set and Retrieves Hierarchical Levels
levels<- Set and Retrieves Hierarchical Levels
levels<--method Set and Retrieves Hierarchical Levels
load_last Make and load Backups of R Objects
match_names Search Matchings between Character and taxlist Objects
match_names-method Search Matchings between Character and taxlist Objects
merge_taxa Merge Concepts
merge_taxa-method Merge Concepts
print_name Format Usage Names for Publications
print_name-method Format Usage Names for Publications
replace_view Management of concept views in taxonomic lists.
replace_view-method Management of concept views in taxonomic lists.
S4_to_list Coerce an S4 Object to a List
subset Subset Method for taxlist Objects
subset-method Subset Method for taxlist Objects
summary Print Overviews for taxlist Objects and their Content
summary-method Print Overviews for taxlist Objects and their Content
synonyms Manage Accepted Names, Synonyms and Basionyms
synonyms-method Manage Accepted Names, Synonyms and Basionyms
tax2traits Set Taxonomic Information as Taxon Traits
tax2traits-method Set Taxonomic Information as Taxon Traits
taxlist Class taxlist
taxlist-class Class taxlist
taxon_names Handle Information on Taxon Usage Names
taxon_names-method Handle Information on Taxon Usage Names
taxon_names<- Handle Information on Taxon Usage Names
taxon_names<--method Handle Information on Taxon Usage Names
taxon_relations Retrieve or replace slot taxonRelations in taxlist objects
taxon_relations-method Retrieve or replace slot taxonRelations in taxlist objects
taxon_relations<- Retrieve or replace slot taxonRelations in taxlist objects
taxon_relations<--method Retrieve or replace slot taxonRelations in taxlist objects
taxon_traits Manipulation of taxon traits in taxlist objects.
taxon_traits-method Manipulation of taxon traits in taxlist objects.
taxon_traits<- Manipulation of taxon traits in taxlist objects.
taxon_traits<--method Manipulation of taxon traits in taxlist objects.
taxon_views Management of concept views in taxonomic lists.
taxon_views-method Management of concept views in taxonomic lists.
taxon_views<- Management of concept views in taxonomic lists.
taxon_views<--method Management of concept views in taxonomic lists.
tnrs Phylotastic Taxonomic Name Resolution Service.
tnrs-method Phylotastic Taxonomic Name Resolution Service.
tv2taxlist Import species lists from Turboveg databases.
update_concept Retrieve or replace slot taxonRelations in taxlist objects
update_concept-method Retrieve or replace slot taxonRelations in taxlist objects
update_name Handle Information on Taxon Usage Names
update_name-method Handle Information on Taxon Usage Names
update_trait Manipulation of taxon traits in taxlist objects.
update_trait-method Manipulation of taxon traits in taxlist objects.
[ Extract or Replace Parts of taxlist Objects
[-method Extract or Replace Parts of taxlist Objects
[<- Extract or Replace Parts of taxlist Objects
[<--method Extract or Replace Parts of taxlist Objects