Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations


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Documentation for package ‘MSIseq’ version 1.0.0

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MSIseq-package Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Tumor Exome Somatic Mutations
Compute.input.variables Compute Mutation Counts from Tumor Exome Somatic Mutations
find.mono.repeats Find Mono-nucleotide Repeats
MSIseq Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Tumor Exome Somatic Mutations
MSIseq.classify Classify Microsatellite Instability with MSIseq Classifier
MSIseq.train Build Microsatellite Instability Classification Model with Training Dataset
NGStestdata Mutation Annotation Data with Test Set Samples
NGStestseqLen Capture Sequence Length for Test Set Samples
NGStesttype Cancer Types for the TCGA Test Set Samples
NGStrainclass MSI Status Classification for the TCGA Training Set Samples
NGStraindata Mutation Annotation Data with Training Set Samples
NGStrainseqLen Capture Sequence Length for Training Set Samples
NGStraintype Cancer Types for the TCGA Training Set Samples
read.fasta Read Fasta File
test.mutationNum Table of Mutation Numbers in Test Set Samples
train.mutationNum Table of Mutation Numbers in Train Set Samples