Clustering and Visualizing Distance Matrices


[Up] [Top]

Documentation for package ‘Mercator’ version 0.10.0

Help Pages

addVisualization The 'Mercator' Distance Visualization Object
barplot-method The 'Mercator' Distance Visualization Object
binaryDistance Binary Distance Definitions Across Methods
BinaryMatrix Class '"BinaryMatrix"'
BinaryMatrix-class Class '"BinaryMatrix"'
CML1000 CML Cytogenetic Data
CML500 CML Cytogenetic Data
dim-method The 'Mercator' Distance Visualization Object
dim-method Class '"BinaryMatrix"'
downsample Downsampling a Distance Visualization to Facilitate iGraph
getClusters The 'Mercator' Distance Visualization Object
goodmanKruskalDistance Binary Distance Definitions Across Methods
goodmanKruskalSimilarity Binary Distance Definitions Across Methods
hammingDistance Binary Distance Definitions Across Methods
hist-method The 'Mercator' Distance Visualization Object
hist-method Class '"BinaryMatrix"'
jaccardDistance Binary Distance Definitions Across Methods
jaccardSimilarity Binary Distance Definitions Across Methods
lgfFeatures CML Cytogenetic Data
Mercator The 'Mercator' Distance Visualization Object
Mercator-class The 'Mercator' Distance Visualization Object
mercator-data CML Cytogenetic Data
pearsonDistance Binary Distance Definitions Across Methods
pearsonSimilarity Binary Distance Definitions Across Methods
plot-method The 'Mercator' Distance Visualization Object
recolor Changing Cluster and Color Assignments in Mercator
remapColors Changing Cluster and Color Assignments in Mercator
removeDuplicateFeatures Remove Duplicate Features from a Binary Matrix Object
russellRaoSimilarity Binary Distance Definitions Across Methods
russelRaoDistance Binary Distance Definitions Across Methods
scatter-method The 'Mercator' Distance Visualization Object
setClusters Changing Cluster and Color Assignments in Mercator
sokalMichenerDistance Binary Distance Definitions Across Methods
sokalMichenerSimilarity Binary Distance Definitions Across Methods
summary-method The 'Mercator' Distance Visualization Object
summary-method Class '"BinaryMatrix"'
t-method Class '"BinaryMatrix"'
ThreshedBinaryMatrix Threshing and Reaping the 'BinaryMatrix'
ThreshedBinaryMatrix-class Threshing and Reaping the 'BinaryMatrix'
threshLGF Threshing and Reaping the 'BinaryMatrix'
validBinaryMatrix Class '"BinaryMatrix"'
[-method The 'Mercator' Distance Visualization Object
[-method Class '"BinaryMatrix"'