NanoString Quality Control Dashboard


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Documentation for package ‘NACHO’ version 1.0.0

Help Pages

autoplot.nacho Plot quality-control metrics and thresholds of a '"nacho"' object
check_outliers Annotate a '"nacho"' object for outliers
deploy Deploy (copy) the shiny application to the specified directory
GSE74821 A '"nacho"' object containing 20 samples of GSE74821 dataset
load_rcc Produce a '"nacho"' object from RCC NanoString files
nacho_conflicts Conflicts between the NACHO and other packages
normalise (re)Normalise a '"nacho"' object
normalize (re)Normalise a '"nacho"' object
print.nacho Print method for '"nacho"' object
render Render a HTML report of a '"nacho"' object
summarize Produce a '"nacho"' object from RCC NanoString files
visualise Visualise quality-control metrics of a '"nacho"' object
visualize Visualise quality-control metrics of a '"nacho"' object