Stratified Medicine


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Documentation for package ‘StratifiedMedicine’ version 0.2.2

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filter_glmnet Filter: Elastic Net (glmnet)
filter_ranger Filter: Random Forest (ranger) Variable Importance
generate_subgrp_data Generate Subgroup Data-sets
param_combine Overall Population Estimate: Aggregating Subgroup-Specific Parameter Estimates
param_cox Parameter Estimation: Cox Regression
param_dr Parameter Estimation: Double-robust estimator
param_lm Parameter Estimation: Linear Regression
param_ple Parameter Estimation: Patient-Level Estimates
param_rmst Parameter Estimation: Restricted Mean Survival Time (RMST)
ple_bart Patient-level Estimates: BART
ple_causal_forest Patient-level Estimates: Causal Forest
ple_glmnet Patient-level Estimates: Elastic Net (glmnet)
ple_ranger Patient-level Estimates: Ranger
ple_rfsrc Patient-level Estimates: randomForestSRC
ple_train Patient-level Estimates: Train Model
plot.PRISM plot.PRISM
plot_dependence Partial dependence plots: Single Variable (marginal effect) or heat map (2 to 3 variables).
plot_importance Importance Plot: Visualize relative importance of variables
predict.ple_train Patient-level Estimates Model: Prediction
predict.PRISM PRISM: Patient Response Identifier for Stratified Medicine (Predictions)
predict.submod_train Subgroup Identification: Train Model (Predictions)
PRISM PRISM: Patient Response Identifier for Stratified Medicine
PRISM_resamp PRISM (Resample): Patient Response Identifier for Stratified Medicine
PRISM_train PRISM (Train): Patient Response Identifier for Stratified Medicine
submod_ctree Subgroup Identification: Conditional Inference Trees (ctree)
submod_glmtree Subgroup Identification: Model-based partitioning (glmtree)
submod_lmtree Subgroup Identification: Model-based partitioning (lmtree)
submod_otr Subgroup Identification: Optimal Treatment Regime (through ctree)
submod_rpart Subgroup Identification: CART (rpart)
submod_train Subgroup Identification: Train Model
submod_weibull Subgroup Identification: Model-based partitioning (Weibull)
summary.PRISM PRISM: Patient Response Identifier for Stratified Medicine (Summary)