Simulate Expression Data from 'igraph' Networks


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Documentation for package ‘graphsim’ version 0.1.2

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generate_expression Generate Simulated Expression
make_adjmatrix Generate Adjacency Matrix
make_adjmatrix_graph Generate Adjacency Matrix
make_commonlink Generate Common Link Matrix
make_commonlink_adjmat Generate Common Link Matrix
make_commonlink_graph Generate Common Link Matrix
make_distance_adjmat Generate Distance Matrix
make_distance_graph Generate Distance Matrix
make_relationship Generate Distance Matrix
make_sigma Generate Sigma Matrix
make_sigma_mat_adjmat Generate Sigma Matrix
make_sigma_mat_dist_adjmat Generate Sigma Matrix
make_sigma_mat_dist_graph Generate Sigma Matrix
make_sigma_mat_graph Generate Sigma Matrix
make_state_matrix Make State Matrix
Pi3K_AKT_graph PI3K/AKT activation
Pi3K_graph PI3K Cascade
plot_directed Extensions to iGraph for Customising plots
RAF_MAP_graph #' RAF/MAP kinase cascade
TGFBeta_Smad_graph TGF-beta receptor signaling activates SMADs