Manipulate MCMC Samples

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Documentation for package ‘mcmcr’ version 0.2.0

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A B C D E I M N P R S T Z

-- A --

anyNA Any Missing Values
anyNA.mcarray Any Missing Values
anyNA.mcmc Any Missing Values
anyNA.mcmc.list Any Missing Values
anyNA.mcmcarray Any Missing Values
anyNA.mcmcr Any Missing Values
anyNA.mcmcrs Any Missing Values
as.character.term Coerce to a term vector
as.mcarray Coerce to an mcarray object
as.mcarray.mcmcarray Coerce to an mcarray object
as.mcmc Coerce to an mcmc object
as.mcmc.list Coerce to an mcmc.list object
as.mcmc.list.mcmc Coerce to an mcmc.list object
as.mcmc.list.mcmcarray Coerce to an mcmc.list object
as.mcmc.list.mcmcr Coerce to an mcmc.list object
as.mcmc.mcarray Coerce to an mcmc object
as.mcmc.mcmcarray Coerce to an mcmc object
as.mcmc.mcmcr Coerce to an mcmc object
as.mcmcarray Coerce to an mcmcarray object
as.mcmcarray.default Coerce to an mcmcarray object
as.mcmcarray.mcarray Coerce to an mcmcarray object
as.mcmcarray.mcmc Coerce to an mcmcarray object
as.mcmcarray.mcmc.list Coerce to an mcmcarray object
as.mcmcarray.mcmcr Coerce to an mcmcarray object
as.mcmcr Coerce to an mcmcr object
as.mcmcr.list Coerce to an mcmcr object
as.mcmcr.mcarray Coerce to an mcmcr object
as.mcmcr.mcmc Coerce to an mcmcr object
as.mcmcr.mcmc.list Coerce to an mcmcr object
as.mcmcr.mcmcarray Coerce to an mcmcr object
as.mcmcrs Coerce to an mcmcrs object
as.mcmcrs.list Coerce to an mcmcr object
as.term Coerce to a term vector
as.term.character Coerce to a term vector
as.term.mcmc Coerce to a term vector
as.term.mcmc.list Coerce to a term vector
as.term.mcmcarray Coerce to a term vector
as.term.mcmcr Coerce to a term vector

-- B --

bind_chains Combine MCMC objects by chains.
bind_chains.mcarray Combine MCMC objects by chains.
bind_chains.mcmc Combine MCMC objects by chains.
bind_chains.mcmc.list Combine MCMC objects by chains.
bind_chains.mcmcarray Combine MCMC objects by chains.
bind_chains.mcmcr Combine MCMC objects by chains.
bind_dimensions Combine two MCMC objects by dimensions
bind_dimensions.mcmcarray Combine two MCMC objects by dimensions
bind_dimensions.mcmcr Combine two MCMC objects by dimensions
bind_dimensions_n Combine multiple MCMC objects by parameter dimensions
bind_dimensions_n.mcmcarray Combine multiple MCMC objects by parameter dimensions
bind_dimensions_n.mcmcr Combine multiple MCMC objects by parameter dimensions
bind_iterations Combine two MCMC objects by iterations
bind_iterations.mcarray Combine two MCMC objects by iterations
bind_iterations.mcmc Combine two MCMC objects by iterations
bind_iterations.mcmc.list Combine two MCMC objects by iterations
bind_iterations.mcmcarray Combine two MCMC objects by iterations
bind_iterations.mcmcr Combine two MCMC objects by iterations
bind_parameters Combine two MCMC object by parameters
bind_parameters.mcmc Combine two MCMC object by parameters
bind_parameters.mcmc.list Combine two MCMC object by parameters
bind_parameters.mcmcr Combine two MCMC object by parameters

-- C --

check_mcmcarray Check mcmcarray
check_mcmcr Check mcmcr
coef Term Coefficients
coef.mcarray Term Coefficients
coef.mcmc Term Coefficients
coef.mcmc.list Term Coefficients
coef.mcmcarray Term Coefficients
coef.mcmcr Term Coefficients
collapse_chains Collapse Chains
collapse_chains.default Collapse Chains
collapse_chains.mcmc.list Collapse Chains
collapse_chains.mcmcr Collapse Chains
combine_dimensions Combine Samples by Dimensions
combine_dimensions.mcmcarray Combine Samples by Dimensions
combine_dimensions.mcmcr Combine Samples by Dimensions
combine_samples Combine MCMC Samples of Two Objects
combine_samples.mcmcarray Combine MCMC Samples of Two Objects
combine_samples.mcmcr Combine MCMC Samples of Two Objects
combine_samples_n Combine MCMC Samples of multiple objects
combine_samples_n.default Combine MCMC Samples of multiple objects
combine_samples_n.list Combine MCMC Samples of multiple objects
converged Object Converged
converged.default Object Converged
converged.mcmcrs Object Converged

-- D --

dims Dimensions

-- E --

esr Effective Sampling Rate
esr.mcarray Effective Sampling Rate
esr.mcmc Effective Sampling Rate
esr.mcmc.list Effective Sampling Rate
esr.mcmcarray Effective Sampling Rate
esr.mcmcr Effective Sampling Rate
esr.mcmcrs Effective Sampling Rate
ess Effective Sample Size
estimates Estimates
estimates.mcarray Estimates
estimates.mcmc Estimates
estimates.mcmc.list Estimates
estimates.mcmcarray Estimates
estimates.mcmcr Estimates

-- I --

is.mcarray Is mcarray Object
is.mcmcarray Is mcmcarray Object
is.mcmcr Is mcmcr Object
is.mcmcrs Is mcmcrs Object
is.term Is Term

-- M --

mcmcarray-object mcmcarray
mcmcr-object mcmcr
mcmcrs Create mcmcrs
mcmcrs-object mcmcrs
mcmcr_example An Example mcmcr Object
mcmc_aperm MCMC Object Transposition
mcmc_aperm.mcmc MCMC Object Transposition
mcmc_aperm.mcmc.list MCMC Object Transposition
mcmc_aperm.mcmcarray MCMC Object Transposition
mcmc_aperm.mcmcr MCMC Object Transposition
mcmc_aperm.mcmcrs MCMC Object Transposition
mcmc_map MCMC Map
mcmc_map.mcmc MCMC Map
mcmc_map.mcmc.list MCMC Map
mcmc_map.mcmcarray MCMC Map
mcmc_map.mcmcr MCMC Map
mcmc_map.mcmcrs MCMC Map

-- N --

nchains Number of MCMC chains
nchains.mcarray Number of MCMC chains
nchains.mcmc Number of MCMC chains
nchains.mcmc.list Number of MCMC chains
nchains.mcmcarray Number of MCMC chains
nchains.mcmcr Number of MCMC chains
nchains.mcmcrs Number of MCMC chains
ndims Number of dimensions
niters Number of MCMC samples
niters.mcarray Number of MCMC chains
niters.mcmc Number of MCMC chains
niters.mcmc.list Number of MCMC chains
niters.mcmcarray Number of MCMC chains
niters.mcmcr Number of MCMC chains
niters.mcmcrs Number of MCMC chains
npars Number of Parameters
npars.default Number of Parameters
npars.mcarray Number of Parameters
npars.mcmcarray Number of Parameters
npars.mcmcr Number of Parameters
npars.mcmcrs Number of Parameters
npdims Number of Parameter Dimensions
npdims.default Parameter Dimensions
npdims.mcmc.list Parameter Dimensions
npdims.mcmcr Parameter Dimensions
nsams Number of MCMC Samples
nsims Number of MCMC Simulations
nterms Number of Terms
nterms.default Number of Terms
nterms.mcmcarray Number of Terms
nterms.mcmcr Number of Terms
nterms.mcmcrs Number of Terms

-- P --

parameters Parameter Names
parameters.mcmc Parameter Names
parameters.mcmc.list Parameter Names
parameters.mcmcr Parameter Names
parameters.mcmcrs Parameter Names
parameters.term Parameter Names
parameters<- Parameter Names
pdims Parameter Dimensions
pdims.mcarray Parameter Dimensions
pdims.mcmc Parameter Dimensions
pdims.mcmc.list Parameter Dimensions
pdims.mcmcarray Parameter Dimensions
pdims.mcmcr Parameter Dimensions
pdims.term Parameter Dimensions
pvalue P-Value

-- R --

rhat R-hat
rhat.mcarray R-hat
rhat.mcmc R-hat
rhat.mcmc.list R-hat
rhat.mcmcarray R-hat
rhat.mcmcr R-hat
rhat.mcmcrs R-hat

-- S --

set_parameters Parameter Names
sort Sort an MCMC Object
sort.mcmc Sort an MCMC Object
sort.mcmc.list Sort an MCMC Object
sort.mcmcr Sort an MCMC Object
sort.mcmcrs Sort an MCMC Object
split_chains Split Chains
split_chains.mcmcarray Split Chains
split_chains.mcmcr Split Chains
subset Subset an MCMC Object
subset.mcmc Subset an MCMC Object
subset.mcmc.list Subset an MCMC Object
subset.mcmcarray Subset an MCMC Object
subset.mcmcr Subset an MCMC Object
subset.mcmcrs Subset an MCMC Object
subset.term Subset an MCMC Object

-- T --

tdims Term Dimensions
tdims.default Term Dimensions
tdims.term Term Dimensions
term Term Vector
terms MCMC Object Terms
terms.mcmc MCMC Object Terms
terms.mcmc.list MCMC Object Terms
terms.mcmcarray MCMC Object Terms
terms.mcmcr MCMC Object Terms
thin Thin MCMC Samples
thin.mcmcarray Thin MCMC Samples
thin.mcmcr Thin MCMC Samples
thin.mcmcrs Thin MCMC Samples

-- Z --

zero Zero MCMC Sample Values
zero.mcarray Zero MCMC Sample Values
zero.mcmcarray Zero MCMC Sample Values
zero.mcmcr Zero MCMC Sample Values