Ordination Methods for the Analysis of Beta-Diversity Indices


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Documentation for package ‘recluster’ version 2.8

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dataisl West Mediterranean island butterflies provided with the package recluster
datamod Virtual island faunas provided with the package recluster
multiboot A multiboot result from dataisl dataset.
reCluster Ordination methods for the analysis of beta-diversity indices.
recluster Ordination methods for the analysis of beta-diversity indices.
recluster.boot Bootstrap nodes of consensus trees
recluster.col Projecting a two dimensional plot in RGB space
recluster.cons Consensus tree among re-sampled trees
recluster.dist Compute a dissimilarity matrix using a battery of beta-diversity indices
recluster.expl Compute the dissimilarity contained in a distance matrix which is explained by a clustering solution of the elements.
recluster.expl.diss Cut a phylogenetic tree to a given series of nodes and computes explained dissimilarity.
recluster.group.col Compute mean coordinate values and RGB colours.
recluster.hist Histogram with tied and zero values
recluster.identify.nodes Evaluating solutions in multiscale bootstrap
recluster.line Identifies a line in a configuration and computes its intercept and angular coefficient
recluster.multi Multiscale bootstrap based on consensus trees
recluster.node.strength Evaluating order row bias in a cluster
recluster.plot A plotter for recluster bootstrapped objects
recluster.plot.col Plotting data in RGB space
recluster.plot.matrix Plot cell values of a matrix in grey scale
recluster.plot.sites.col Plotting RGB dots on a custom coordinate space
recluster.procrustes Compute a procrustes analysis between two matrices even if only a subset of cases are in common.
recluster.region A new clustering method based on continuous consensus.
recluster.rotate Rotates a bidimensional configuration according to a line
recluster.test.dist Test variation lost by a bidimensional configuration when the coordinates of the elements are reduced to the configuration of the barycentres of a given series of groups.
treebut Phylogenetic tree for the butterfly species included in dataisl dataset
treemod Hypothetical phylogenetic tree for the virtual island faunas provided with the package recluster