BinMatInput_ordination |
Example input data containing a consolidated binary matrix with groups |
BinMatInput_reps |
Example input data containing a binary matrix comprising replicate pairs |
check.data |
Checks binary matrix for unwanted characters. |
consolidate |
Consolidates replicate pairs in a binary matrix. |
errors |
Calculates Jaccard and Euclidean error rates. |
group.names |
Outputs group names specified in the input file for the creation of an nMDS plot. |
nmds |
Creates a non-metric multidimensional scaling plot (nMDS). |
peak.remove |
Removes samples with peaks equal to or less than a specified threshold value. |
peaks.consolidated |
Calculates peak numbers for a consolidated data set (total, maximum, and minimum). |
peaks.original |
Calculates peak numbers for the data set with all replicates (total, maximum, and minimum). |
scree |
Draws a scree plot. |
shepard |
Creates a shepard plot. |
upgma |
Draws a hierarchical clustering tree (UPGMA). |