Belief Propagation in Genotype-Phenotype Networks


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Documentation for package ‘geneNetBP’ version 2.0.1

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geneNetBP-package Belief Propagation in Genotype-Phenotype Networks
absorb.dbn Absorb evidence and propagate beliefs in a genotype-phenotype network
absorb.gnbp Absorb evidence and propagate beliefs in a genotype-phenotype network
fit.dbn Fit a Conditional Gaussian Bayesian Network or Discrete Bayesian Network to QTL data
fit.gnbp Fit a Conditional Gaussian Bayesian Network or Discrete Bayesian Network to QTL data
gen.evidence Generate a sequence of evidence for a continuous node in a conditional gaussian bayesian network.
geneNetBP Belief Propagation in Genotype-Phenotype Networks
hdl Mus Musculus HDL QTL data from Leduc et. al. (2012)
mouse Mus Musculus Kidney eQTL data from Hageman et. al. (2011)
plot.dbn Plot a Genotype-Phenotype Network
plot.dbnfit Plot a Genotype-Phenotype Network
plot.gnbp Plot a Genotype-Phenotype Network
plot.gpfit Plot a Genotype-Phenotype Network
toy Toy example dataset
yeast Saccharomyces Cerevisiae eQTL data from Kruglak et. al. (2005)