Genome-Wide Structural Equation Modeling


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Documentation for package ‘gwsem’ version 2.0.5

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gwsem-package Genome-wide Structural Equation Modeling
buildItem Build a model suitable for a single item genome-wide association study
buildOneFac Build a model suitable for a single factor genome-wide association study
buildOneFacRes Build a model suitable for a single factor residual genome-wide association study
buildOneItem Build a model suitable for a single item genome-wide association study
buildTwoFac Build a model suitable for a two factor genome-wide association study
GWAS Run a genome-wide association study (GWAS) using the provided model
gwsem Genome-wide Structural Equation Modeling
isSuspicious Determine which results are suspicious
loadResults Load GWAS results into a single data.frame
loadSuspicious Load suspicious GWAS results into a single data.frame
plot.gwsemResult Creates a Manhattan plot
prepareComputePlan Return a suitable compute plan for a genome-wide association study
setupExogenousCovariates Set up exogenous model covariates
setupThresholds Set up thresholds for ordinal indicators