Estimate Permutation p-Values for Random Forest Importance Metrics


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Documentation for package ‘rfPermute’ version 2.1.81

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casePredictions Case Predictions
classConfInt Classification Confidence Intervals
cleanRFdata Clean Random Forest Input Data
confusionMatrix Confusion Matrix
exptdErrRate Expected Error Rate
impHeatmap Importance Heatmap
pctCorrect Percent Correctly Classified
plot.rp.importance Plot Random Forest Importance Distributions
plotConfMat Plot Confusion Matrix
plotImpVarDist Plot Important Variable Distribution
plotInbag Plot inbag distribution
plotNull Plot Random Forest Importance Null Distributions
plotOOBtimes Plot Times OOB
plotPredictedProbs Plot Predicted Probabilities
plotRFtrace OOB Trace
plotVotes Plot Vote Distribution
proximityPlot Plot Random Forest Proximity Scores
rfPermute Estimate Permutation p-values for Random Forest Importance Metrics
rfPermute.default Estimate Permutation p-values for Random Forest Importance Metrics
rfPermute.formula Estimate Permutation p-values for Random Forest Importance Metrics
rp.combine Combine rfPermute Objects
rp.importance Extract rfPermute Importance Scores and p-values.
symb.metab Symbiodinium type metabolite profiles