Collection of Rudimentary Bioinformatics Tools


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Documentation for package ‘Corbi’ version 0.4-4

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Corbi-package Corbi - Collection of Rudimentary Bioinformatics Tools
best_subnets The best subnetworks
column Extract a column from a matrix
Corbi Corbi - Collection of Rudimentary Bioinformatics Tools
extend_subnets Extend subnetworks from smaller subnetworks
get_shortest_distances Calculate shortest distances of unweighted network
get_subnets All subnetworks of limited size
kappa_score Cohen's kappa score
markrank MarkRank
net_align Network alignment method based on conditional random fields
net_query Network querying method based on conditional random fields
net_query_batch Network querying method based on conditional random fields
nnzero The number of non-zero values of a submatrix
pmultihyper The Multivariate Hypergeometric Distribution
pmultinom The Multinomial Distribution
read_net Read network information from text file
rmultihyper The Multivariate Hypergeometric Distribution
submatrix Extract a submatrix from a matrix
write_net Write network information to text file