HiCglmi-package |
Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms |
annotateHiCBin |
Annotate Hi-C bins with genomic feature data. |
createHiCDataset |
Create a dataset for further processing with the R package. |
dataExample |
Hi-C matrix and ChIP-seq peaks. |
filterCouples |
Filter Hi-C data based on knowledge. |
HiCglmi |
Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms |
HiCglmiModel |
The generalized linear model with interactions. |
HiCglmiProcData |
Process data for further generalized linear regression with interactions (GLMI). |
readGFBed |
Read genomic feature bed file |
testDistancePowerLawDistrib |
Check log-log linear relation between distance and Hi-C count. |