Joint Analysis and Imputation of Incomplete Data


[Up] [Top]

Documentation for package ‘JointAI’ version 0.5.0

Help Pages

JointAI-package JointAI: Joint Analysis and Imputation of Incomplete Data
add_samples Add samples to an object of class JointAI
clmm_imp Joint analysis and imputation of incomplete data
clm_imp Joint analysis and imputation of incomplete data
coef.JointAI Summary of an object of class JointAI
confint.JointAI Summary of an object of class JointAI
coxph_imp Joint analysis and imputation of incomplete data
default_hyperpars Get default values for hyperparameters
densplot Plot posterior density from JointAI model
densplot.JointAI Plot posterior density from JointAI model
densplot.mcmc.list Plot posterior density from JointAI model
get_imp_meth Set default (imputation) models and order
get_MIdat Extract multiple imputed datasets
get_models Set default (imputation) models and order
glmer_imp Joint analysis and imputation of incomplete data
glme_imp Joint analysis and imputation of incomplete data
glm_imp Joint analysis and imputation of incomplete data
GR_crit Gelman-Rubin criterion for convergence
JointAI JointAI: Joint Analysis and Imputation of Incomplete Data
JointAIObject Fitted object of class JointAI
list_impmodels List imputation models
list_models List imputation models
lme_imp Joint analysis and imputation of incomplete data
lm_imp Joint analysis and imputation of incomplete data
longDF Longitudinal example dataset
MC_error Monte Carlo error
md_pattern Missing data pattern
model_imp Joint analysis and imputation of incomplete data
NHANES National Health and Nutrition Examination Survey (NHANES) Data
parameters Parameter names of an JointAI object
plot.MCElist Monte Carlo error
plot_all Visualize the distribution of all variables in the dataset
plot_imp_distr Plot the distribution of observed and imputed values
predDF Create a new dataframe for prediction
predDF.formula Create a new dataframe for prediction
predDF.JointAI Create a new dataframe for prediction
predict.JointAI Predict values from an object of class JointAI
print.JointAI Summary of an object of class JointAI
print.summary.JointAI Summary of an object of class JointAI
set_refcat Set the reference categories for all categorical covariates in the model
sharedParams Parameters used by several functions in JointAI.
simLong Simulated Longitudinal Data in Long and Wide Format
simWide Simulated Longitudinal Data in Long and Wide Format
summary.JointAI Summary of an object of class JointAI
survreg_imp Joint analysis and imputation of incomplete data
traceplot Traceplot of a JointAI model
traceplot.JointAI Traceplot of a JointAI model
traceplot.mcmc.list Traceplot of a JointAI model
wideDF Cross-sectional example dataset