CoG |
Covariate Set in the G->X path |
CoY |
Covariate Set in the X->Y path |
def_initial |
Define initial values of parameters for clustering |
def_tol |
Define maximum number of iteration and convergence |
def_tune |
Define tuning parameters for regularization during integrative clustering |
est_lucid |
Estimating latent clusters with multi-omics data |
G1 |
Genetic Features Set 1 |
G2 |
Genetic Features Set 2 |
plot_lucid |
Plot Sankey diagram for integrative clustering |
pred_lucid |
Model Predictions for LUCID |
sem_lucid |
SEM for latent cluster estimation |
summary_lucid |
Summarize results for integrative clustering |
tune_lucid |
Parallel Grid Search for Tuning Parameters in Latent Cluster Analysis |
Y1 |
Outcome Set 1 |
Y2 |
Outcome Set 2 |
Z1 |
Biomarker Set 1 |
Z2 |
Biomarker Set 2 |