Quantitative Analysis of Motion


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Documentation for package ‘MotilityLab’ version 0.2-5

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motilityLab-package MotilityLab: Quantitative Motion Analysis
aggregate.tracks Compute Summary Statistics of Subtracks
applyStaggered Compute a Measure on a Track in a Staggered Fashion
as.data.frame.tracks Convert Tracks to Data Frame
as.list.tracks Convert from Tracks to List
as.tracks Tracks Objects
as.tracks.data.frame Convert from Data Frame to Tracks
as.tracks.list Tracks Objects
asphericity Track Measures
BCells Two-Photon Data: B Cells in a Lymph Node
beaucheminTrack Simulate a 3D Cell Track Using the Beauchemin Model
boundingBox Bounding Box of a Tracks Object
brownianTrack Simulate an Uncorrelated Random Walk
c.tracks Tracks Objects
clusterTracks Cluster Tracks
displacement Track Measures
displacementRatio Track Measures
displacementVector Track Measures
duration Track Measures
filterTracks Filter Tracks
fractalDimension Track Measures
hotellingsTest Test Unbiasedness of Motion
hurstExponent Track Measures
interpolateTrack Interpolate Track Positions
is.tracks Tracks Objects
maxDisplacement Track Measures
maxTrackLength Length of Longest Track
meanTurningAngle Track Measures
motilityLab MotilityLab: Quantitative Motion Analysis
Neutrophils Two-Photon Data: Neutrophils in an Infected Lung
normalizeToDuration Normalize a Measure to Track Duration
normalizeTracks Normalize Tracks
outreachRatio Track Measures
overallAngle Track Measures
overallDot Track Measures
plot.tracks Plot Tracks in 2D
plot3d Plot Tracks in 3D
plotTrackMeasures Bivariate Scatterplot of Track Measures
prefixes Get Track Prefixes
projectDimensions Extract Spatial Dimensions
read.tracks.csv Read Tracks from Text File
repairGaps Process Tracks Containing Gaps
selectTracks Select Tracks by Measure Values
simulateTracks Generate Tracks by Simulation
sort.tracks Sort Track Positions by Time
speed Track Measures
splitTrack Split Track into Multiple Tracks
squareDisplacement Track Measures
staggered Staggered Version of a Function
straightness Track Measures
subsample Subsample Track by Constant Factor
subtracks Decompose Track(s) into Subtracks
TCells Two-Photon Data: T Cells in a Lymph Node
timeStep Compute Time Step of Tracks
trackLength Track Measures
TrackMeasures Track Measures
tracks Tracks Objects
wrapTrack Create Track Object from Single Track