Negative Binomial Linear Discriminant Analysis


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Documentation for package ‘NBLDA’ version 0.99.0

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NBLDA-package Classifying count data using Poisson/Negative Binomial linear discriminant analysis
cervical Cervical cancer data
control Accessors for the 'control' slot.
control-method Accessors for the 'control' slot.
FindBestTransform Find the Power Transformation Parameter.
generateCountData Generate Count Data
getShrinkedDispersions Estimate Shrinked Overdispersions
inputs Accessors for the 'input' slot.
inputs-method Accessors for the 'input' slot.
nblda-class 'nblda' object
nbldaControl Control parameters for trained NBLDA model.
nbldaTrained Accessors for the 'crossValidated' slot.
nbldaTrained-method Accessors for the 'crossValidated' slot.
nblda_input-class 'nblda_input' object
nblda_trained-class 'nblda_trained' object
normalization Accessors for the 'type' slot.
normalization-method Accessors for the 'type' slot.
NullModel Calculate Normalized Counts and Related Training Parameters.
NullModelTest Calculate Normalized Counts and Related Training Parameters.
plot Plot Method for the 'nblda' and 'nblda_trained' Classes
plot-method Plot Method for the 'nblda' and 'nblda_trained' Classes
plot.nblda Plot Method for the 'nblda' and 'nblda_trained' Classes
plot.nblda_trained Plot Method for the 'nblda' and 'nblda_trained' Classes
predict Extract predictions from NBLDA model
predict-method Extract predictions from NBLDA model
predict.nblda Extract predictions from NBLDA model
selectedFeatures Accessors for the 'selectedFeatures' slot.
selectedFeatures-method Accessors for the 'selectedFeatures' slot.
show Show Method for the S4 classes in NBLDA Package
show-method Show Method for the S4 classes in NBLDA Package
show.nblda Show Method for the S4 classes in NBLDA Package
show.nblda_input Show Method for the S4 classes in NBLDA Package
show.nblda_trained Show Method for the S4 classes in NBLDA Package
trainNBLDA Train Model over Different Tuning Parameters