Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis


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Documentation for package ‘NetworkToolbox’ version 1.2.3

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NetworkToolbox-package NetworkToolbox-package
adapt.a Adaptive Alpha
behavOpen NEO-PI-3 for Resting-state Data
betweenness Betweenness Centrality
binarize Binarize Network
centlist List of Centrality Measures
closeness Closeness Centrality
clustcoeff Clustering Coefficient
comcat Communicating Nodes
comm.close Community Closeness Centrality
comm.eigen Community Eigenvector Centrality
comm.str Community Strength/Degree Centrality
conn Network Connectivity
convert2igraph Convert Network(s) to igraph's Format
convertConnBrainMat Import CONN Toolbox Brain Matrices to R format
cor2cov Convert Correlation Matrix to Covariance Matrix
core.items Core Items
cpmEV Connectome-based Predictive Modeling-External Validation
cpmFP Connectome-based Predictive Modeling-Fingerprinting
cpmFPperm Connectome-based Predictive Modeling-Fingerprinting Permutation
cpmIV Connectome-based Predictive Modeling-Internal Validation
degree Degree
depend Dependency Network Approach
depna Dependency Neural Networks
desc Variable Descriptive Statisitcs
desc.all Dataset Descriptive Statisitcs
distance Distance
diversity Diversity Coefficient
ECO ECO Neural Network Filter
ECOplusMaST ECO+MaST Network Filter
edgerep Edge Replication
eigenvector Eigenvector Centrality
flow.frac Flow Fraction
gateway Gateway Coefficient
hybrid Hybrid Centrality
impact Node Impact
is.graphical Determines if Network is Graphical
kld Kullback-Leibler Divergence
lattnet Generates a Lattice Network
leverage Leverage Centrality
LoGo Local/Global Inversion Method (GGM of 'TMFG')
louvain Louvain Community Detection Algorithm
MaST Maximum Spanning Tree
nams Network Adjusted Mean/Sum
neoOpen NEO-PI-3 Openness to Experience Data
net.coverage Network Coverage
NetworkToolbox NetworkToolbox-package
neuralnetfilter Neural Network Filter
participation Participation Coefficient
pathlengths Characteristic Path Lengths
randnet Generates a Random Network
reg Regression Matrix
resp.rep Repeated Responses Check
rmse Root Mean Square Error
rspbc Randomized Shortest Paths Betweenness Centrality
sim.swn Simulate Small-world Network
smallworldness Small-worldness Measure
stable Stabilizing Nodes
strength Node Strength
threshold Threshold Network Estimation Methods
TMFG Triangulated Maximally Filtered Graph
transitivity Transitivity