Random Effects for the Identification of Differential Splicing


[Up] [Top]

Documentation for package ‘REIDS’ version 0.1.0

Help Pages

REIDS-package Random Effects for the Identification of Differential Splicing.
AnnotateGenes "AnnotateGenes"
AnnotateGeneSymbol "AnnotateGeneSymbol"
arcplot Arc Diagram Plot
ASExons "ASExons"
CreateOutput "CreateOutput"
DataProcessing DataProcessing
ExampleFirmaOutput Example data set for FIRMA
ExonTesting "ExonTesting"
ExpressionLevelPlot "ExpressionLevelPlot"
FIRMAScores "FIRMAScores"
GetIntensities "GetIntensities"
iniREIDS "iniREIDS"
JunInfo JunInfo
node_coords Node Coordinates
PivotTransformData "PivotTransformation"
REIDS Random Effects for the Identification of Differential Splicing.
REIDSFunction "REIDSFunction"
reidsfunction_genebygene "reidsfunction_genebygene"
REIDSFunction_HPCVersion "REIDS_HPCVersion"
REIDSJunctionAssessment_HPCVersion REIDSJunctionAssessment_HPCVersion
REIDSmodel_intern "REIDSmodel_intern"
REIDS_Analysis REIDS_Analysis
REIDS_IsoformAssesment REIDS_IsoformAssesment
REIDS_JunctionAssesment REIDS_JunctionAssessment
REMAP_SplitProbeSets "REMAP_SplitProbeSets"
SpliceIndex "SpliceIndex"
TC12000010 Example data set
TC12000010_ExonLevel Exon level data
TC12000010_GeneLevel Gene level data
TC12000010_positions Positions
TC12000010_REIDS_Output REIDS Output
TC12000010_transcript.clusters Transcript Clusters
TC1500264 Example data set
TranscriptsPlot "TranscriptsPlot "
trim "trim"
xynodes X or Y coordinates of node locations