SCORPIUS-package | SCORPIUS: Trajectory inference from single-cell RNA sequencing data. |
apply_quantile_scale | Apply a quantile scale. |
apply_uniform_scale | Apply a uniform scale |
draw_trajectory_heatmap | Draw time-series heatmap |
draw_trajectory_plot | Visualise SCORPIUS |
evaluate_dim_red | Evaluate the dimensionality reduction |
evaluate_trajectory | Evaluate the inferred timeline |
extract_modules | Extract modules of features |
generate_dataset | Generate a synthetic dataset |
gene_importances | Calculate the importance of a feature |
ginhoux | scRNA-seq data of dendritic cell progenitors. |
infer_initial_trajectory | Infer an initial trajectory through space |
infer_trajectory | Infer linear trajectory through space |
knn | k Nearest Neighbour indices and distances |
knn_distances | k Nearest Neighbour distances |
reduce_dimensionality | Dimensionality reduction |
reverse_trajectory | Reverse a trajectory |
scale_quantile | Calculate and apply a quantile scale |
scale_uniform | Scaling and centering of matrix-like objects |
SCORPIUS | SCORPIUS: Trajectory inference from single-cell RNA sequencing data. |