Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data


[Up] [Top]

Documentation for package ‘SCORPIUS’ version 1.0.2

Help Pages

SCORPIUS-package SCORPIUS: Trajectory inference from single-cell RNA sequencing data.
apply_quantile_scale Apply a quantile scale.
apply_uniform_scale Apply a uniform scale
draw_trajectory_heatmap Draw time-series heatmap
draw_trajectory_plot Visualise SCORPIUS
evaluate_dim_red Evaluate the dimensionality reduction
evaluate_trajectory Evaluate the inferred timeline
extract_modules Extract modules of features
generate_dataset Generate a synthetic dataset
gene_importances Calculate the importance of a feature
ginhoux scRNA-seq data of dendritic cell progenitors.
infer_initial_trajectory Infer an initial trajectory through space
infer_trajectory Infer linear trajectory through space
knn k Nearest Neighbour indices and distances
knn_distances k Nearest Neighbour distances
reduce_dimensionality Dimensionality reduction
reverse_trajectory Reverse a trajectory
scale_quantile Calculate and apply a quantile scale
scale_uniform Scaling and centering of matrix-like objects
SCORPIUS SCORPIUS: Trajectory inference from single-cell RNA sequencing data.