AACharacterSet |
AA, DNA, RNA character set |
AAGapCharacterSet |
AA, DNA, RNA character set |
AAToInt |
AA, DNA, RNA character set |
AmbiguousAACharacterSet |
AA, DNA, RNA character set |
AmbiguousAAGapCharacterSet |
AA, DNA, RNA character set |
Dayhoffn |
PAM and Dayhoff matrices calculation |
DNACharacterSet |
AA, DNA, RNA character set |
DNAGapCharacterSet |
AA, DNA, RNA character set |
GONNET |
The GONNET AA matrix |
GONNETBF |
The GONNET AA matrix |
optim.phylo.wls |
Phylogeny inference using the weighted least squares method |
PAMn |
PAM and Dayhoff matrices calculation |
RNACharacterSet |
AA, DNA, RNA character set |
RNAGapCharacterSet |
AA, DNA, RNA character set |
TKF91 |
Evolutionary distance estimation with TKF91 model |
TKF91Pair |
Evolutionary distance estimation with TKF91 model |
TKF92 |
Evolutionary distance estimation with TKF92 model |
TKF92HG |
Evolutionary distance estimation with TKF92 model considering the regional heterogeneity of substitution rates |
TKF92HGPair |
Evolutionary distance estimation with TKF92 model considering the regional heterogeneity of substitution rates |
TKF92Pair |
Evolutionary distance estimation with TKF92 model |