Animal Movement Tools


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Documentation for package ‘amt’ version 0.0.5.0

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A B C D E F G H I M N P R S T V

amt-package amt: Animal Movement Tools

-- A --

adjust_kappa Adjust parameters
adjust_param Adjust parameters
adjust_scale Adjust parameters
adjust_shape Adjust parameters
amt amt: Animal Movement Tools
animal_sim Simulated movement data of 1 animal.
as_bcpa Coerce a track to other formats.
as_bcpa.track_xyt Coerce a track to other formats.
as_ltraj Coerce a track to other formats.
as_ltraj.track_xy Coerce a track to other formats.
as_ltraj.track_xyt Coerce a track to other formats.
as_move Coerce a track to other formats.
as_move.track_xy Coerce a track to other formats.
as_move.track_xyt Coerce a track to other formats.
as_moveHMM Coerce a track to other formats.
as_moveHMM.track_xy Coerce a track to other formats.
as_rad Converts angles to radians
as_sp Coerce a track to other formats.
as_sp.steps_xy Coerce a track to other formats.
as_track Coerce to track
as_track.SpatialPoints Coerce to track

-- B --

bbox Get bounding box of a track.
bbox.track_xy Get bounding box of a track.

-- C --

centroid Calculate the centroid of a track.
centroid.track_xy Calculate the centroid of a track.
coercion Coerce a track to other formats.
coords Coordinates of a track.
crs Coordinate References System (CRS)
cumulative_ud Calculate a cumulative UD
cumulative_ud.kde Calculate a cumulative UD
cumulative_ud.RasterLayer Calculate a cumulative UD
cum_dist Movement metrics
cum_ud Calculate a cumulative UD

-- D --

deer Relocations of 1 red deer
diff_x Track Methods
diff_x.track_xy Track Methods
diff_y Track Methods
diff_y.track_xy Track Methods
direction_abs Functions to create and work with steps
direction_abs.track_xy Functions to create and work with steps
direction_rel Functions to create and work with steps
direction_rel.track_xy Functions to create and work with steps
distance_to_center Distance to center
distance_to_center.track_xy Distance to center
distance_to_centers Distance to center
distance_to_centers.track_xy Distance to center
dist_cent Distance to center

-- E --

extract_covariates Extract covariate values
extract_covariates.random_points Extract covariate values
extract_covariates.steps_xy Extract covariate values
extract_covariates.track_xy Extract covariate values
extract_covariates_along Extract covariate values
extract_covariates_along.steps_xy Extract covariate values

-- F --

filter_min_n_burst Filter bursts by number of relocations
filter_min_n_burst.track_xy Filter bursts by number of relocations
fit_clogit Fit a conditional logistic regression
fit_issf Fit a conditional logistic regression
fit_logit Fit logistic regression
fit_rsf Fit logistic regression
fit_sl_dist Fit a statistical distribution to step lengths.
fit_sl_dist_base Fit a statistical distribution to step lengths.
fit_ssf Fit a conditional logistic regression
fit_ta_dist Fit a statistical distribution to the turn angles of a track
fit_ta_dist_base Fit a statistical distribution to the turn angles of a track
from Duration of tracks
from.track_xyt Duration of tracks
from_to Duration of tracks
from_to.track_xyt Duration of tracks

-- G --

get_crs Coordinate References System (CRS)
get_kappa Get 'kappa'

-- H --

habitat Habitat of simulated data
habitat_kernel Simulate UD from fitted SSF
has_crs Coordinate References System (CRS)
hr Home ranges
hr_area Home ranges
hr_isopleths Home ranges
hr_kde Home ranges
hr_kde.track_xy Home ranges
hr_kde_ref Home ranges
hr_kde_ref.track_xy Home ranges
hr_locoh_k Home ranges
hr_locoh_k.track_xy Home ranges
hr_mcp Home ranges
hr_mcp.track_xy Home ranges

-- I --

inspect Inspect a track
inspect.track_xy Inspect a track
intensity_use Movement metrics

-- M --

make_track Create a 'track_*'
mk_track Create a 'track_*'
movement_kernel Simulate UD from fitted SSF
movement_metrics Movement metrics
msd Movement metrics

-- N --

nsd Track Methods
nsd.track_xy Track Methods

-- P --

plot_sl Plot step-length distribution

-- R --

random_points Generate random points
random_points.kde Generate random points
random_points.mcp Generate random points
random_points.track_xy Generate random points
random_steps Generate Random Steps
random_steps.steps_xy Generate Random Steps
remove_capture Removes Capture Effects
remove_capture_effect Removes Capture Effects
remove_capture_effect.track_xyt Removes Capture Effects

-- S --

sh Relocations of 1 red deer
sh_forest Forest cover
simulate_tud Simulate UD from fitted SSF
simulate_ud Simulate UD from fitted SSF
sim_ud Simulate UD from fitted SSF
sinuosity Movement metrics
sl_distr Step-length distribution
sl_distr.fit_clogit Step-length distribution
sl_distr.list Step-length distribution
sl_distr.random_steps Step-length distribution
sl_params Step lengths parameters
sl_params.fitdist Step lengths parameters
sl_params.fit_clogit Step lengths parameters
sl_params.random_steps Step lengths parameters
sl_scale Step lengths parameters
sl_shape Step lengths parameters
speed Speed
speed.track_xyt Speed
steps Functions to create and work with steps
steps.track_xy Functions to create and work with steps
steps.track_xyt Functions to create and work with steps
steps_by_burst Functions to create and work with steps
steps_by_burst.track_xyt Functions to create and work with steps
step_lengths Functions to create and work with steps
step_lengths.track_xy Functions to create and work with steps
straightness Movement metrics
summarize_sampling_rate Returns a summary of sampling rates
summarize_sampling_rate.track_xyt Returns a summary of sampling rates

-- T --

tac Movement metrics
ta_distr Turn angle distribution
ta_distr.fit_clogit Turn angle distribution
ta_distr.list Turn angle distribution
ta_distr.random_steps Turn angle distribution
ta_kappa Turn angle parameters
ta_params Turn angle parameters
ta_params.fit_clogit Turn angle parameters
ta_params.random_steps Step lengths parameters
time_of_day Time of the day when a fix was taken
time_of_day.steps_xyt Time of the day when a fix was taken
time_of_day.track_xyt Time of the day when a fix was taken
to Duration of tracks
to.track_xyt Duration of tracks
tot_dist Movement metrics
track Create a 'track_*'
track_methods Track Methods
track_resample Resample track
track_resample.track_xyt Resample track
transform_coords Transform CRS
transform_coords.track_xy Transform CRS
transform_crs Transform CRS

-- V --

velocity Track Methods
velocity.track_xyt Track Methods