Bayesian Additive Models for Location Scale and Shape (and Beyond)


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Documentation for package ‘bamlss’ version 1.0-1

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A B C D F G H J L M N P Q R S T V

bamlss-package Bayesian Additive Models for Location Scale and Shape (and Beyond)

-- A --

Austria Austria States and Topography
AustriaTopo Austria States and Topography

-- B --

bamlss Fit Bayesian Additive Models for Location Scale and Shape (and Beyond)
bamlss.engine.helpers BAMLSS Engine Helper Functions
bamlss.engine.setup BAMLSS Engine Setup Function
bamlss.family Distribution Families in 'bamlss'
bamlss.formula Formulae for BAMLSS
bamlss.frame Create a Model Frame for BAMLSS
bamlss.model.frame BAMLSS Model Frame
BayesX Markov Chain Monte Carlo for BAMLSS using 'BayesX'
BayesX.control Markov Chain Monte Carlo for BAMLSS using 'BayesX'
bayesx2 Some Shortcuts
bboost Bootstrap Boosting
bboost.plot Bootstrap Boosting
beta_bamlss Distribution Families in 'bamlss'
bfit Fit BAMLSS with Backfitting
bfit_glmnet Fit BAMLSS with Backfitting
bfit_iwls Fit BAMLSS with Backfitting
bfit_iwls_lm Fit BAMLSS with Backfitting
bfit_iwls_Matrix Fit BAMLSS with Backfitting
bfit_iwls_optim Fit BAMLSS with Backfitting
bfit_lm Fit BAMLSS with Backfitting
bfit_optim Fit BAMLSS with Backfitting
binomial_bamlss Distribution Families in 'bamlss'
boost Boosting BAMLSS
boost.frame Boosting BAMLSS
boost.plot Boosting BAMLSS
boost.summary Boosting BAMLSS
boost2 Some Shortcuts
boostm Boosting BAMLSS
BUGSeta Markov Chain Monte Carlo for BAMLSS using JAGS
BUGSmodel Markov Chain Monte Carlo for BAMLSS using JAGS

-- C --

c95 Compute 95% Credible Interval and Mean
cnorm_bamlss Distribution Families in 'bamlss'
coef.bamlss Extract BAMLSS Coefficients
colorlegend Plot a Color Legend
confint.bamlss Extract BAMLSS Coefficients
continue Continue Sampling
cox.mcmc Cox Model Markov Chain Monte Carlo
cox.mode Cox Model Posterior Mode Estimation
cox.predict Cox Model Prediction
cox_bamlss Distribution Families in 'bamlss'

-- D --

DIC Deviance Information Criterion
dl.bamlss Deep Learning BAMLSS

-- F --

family.bamlss Distribution Families in 'bamlss'
family.bamlss.frame Distribution Families in 'bamlss'
fitted.bamlss BAMLSS Fitted Values

-- G --

GAMart GAM Artificial Data Set
gamma_bamlss Distribution Families in 'bamlss'
gaussian2_bamlss Distribution Families in 'bamlss'
Gaussian_bamlss Distribution Families in 'bamlss'
gaussian_bamlss Distribution Families in 'bamlss'
get.par BAMLSS Engine Helper Functions
get.state BAMLSS Engine Helper Functions
get_BayesXsrc Markov Chain Monte Carlo for BAMLSS using 'BayesX'
gF Get a BAMLSS Family
glogis_bamlss Distribution Families in 'bamlss'
GMCMC General Markov Chain Monte Carlo for BAMLSS
GMCMC_iwls General Markov Chain Monte Carlo for BAMLSS
GMCMC_iwlsC General Markov Chain Monte Carlo for BAMLSS
GMCMC_iwlsC_gp General Markov Chain Monte Carlo for BAMLSS
GMCMC_slice General Markov Chain Monte Carlo for BAMLSS
gpareto_bamlss Distribution Families in 'bamlss'

-- H --

homstart_data HOMSTART Precipitation Data

-- J --

JAGS Markov Chain Monte Carlo for BAMLSS using JAGS
jm.mcmc Fit Flexible Additive Joint Models
jm.mode Fit Flexible Additive Joint Models
jm.predict Fit Flexible Additive Joint Models
jm.survplot Fit Flexible Additive Joint Models
jm.transform Fit Flexible Additive Joint Models
jm_bamlss Fit Flexible Additive Joint Models

-- L --

la Lasso Smooth Constructor
lasso Lasso Smooth Constructor
lasso.coef Lasso Smooth Constructor
lasso.plot Lasso Smooth Constructor
lasso.stop Lasso Smooth Constructor
lasso.transform Lasso Smooth Constructor
lasso2 Some Shortcuts
lin Linear Effects for BAMLSS
LondonBoroughs London Fire Data
LondonBoundaries London Fire Data
LondonFire London Fire Data
LondonFStations London Fire Data

-- M --

make_weights Neural Networks for BAMLSS
model.frame.bamlss BAMLSS Model Frame
model.frame.bamlss.frame BAMLSS Model Frame
model.matrix.bamlss.formula Construct/Extract BAMLSS Design Matrices
model.matrix.bamlss.frame Construct/Extract BAMLSS Design Matrices
model.matrix.bamlss.terms Construct/Extract BAMLSS Design Matrices
multinomial_bamlss Distribution Families in 'bamlss'
MVNORM Create Samples for BAMLSS by Multivariate Normal Approximation
mvnormAR1_bamlss Distribution Families in 'bamlss'
mvnorm_bamlss Distribution Families in 'bamlss'

-- N --

n Neural Networks for BAMLSS
n.weights Neural Networks for BAMLSS
neighbormatrix Compute a Neighborhood Matrix from Spatial Polygons

-- P --

parameters Extract or Initialize Parameters for BAMLSS
plot.bamlss Plotting BAMLSS
plot.bamlss.residuals Compute BAMLSS Residuals
plot.bamlss.results Plotting BAMLSS
plot.boost.summary Boosting BAMLSS
plot.stabsel Stability selection.
plot2d Plot 2D Effects
plot3d Plot 3D Effects
plotblock Factor Variable and Random Effects Plots
plotmap Plot Maps
plotneighbors Compute a Neighborhood Matrix from Spatial Polygons
plotnonp Plot 2D Effects
poisson_bamlss Distribution Families in 'bamlss'
predict.bamlss BAMLSS Prediction
predict.bboost Bootstrap Boosting
predict.dl.bamlss Deep Learning BAMLSS
Predict.matrix.kriging.smooth Kriging Smooth Constructor
Predict.matrix.tensorX.smooth Markov Chain Monte Carlo for BAMLSS using 'BayesX'
Predict.matrix.tensorX3.smooth Markov Chain Monte Carlo for BAMLSS using 'BayesX'
predictn Neural Networks for BAMLSS
print.boost.summary Boosting BAMLSS
print.summary.bamlss Summary for BAMLSS

-- Q --

quant_bamlss Markov Chain Monte Carlo for BAMLSS using 'BayesX'

-- R --

randomize Transform Smooth Constructs to Random Effects
rb Random Bits for BAMLSS
residuals.bamlss Compute BAMLSS Residuals
results.bamlss.default Compute BAMLSS Results for Plotting and Summaries
rJM Simulate longitudinal and survival data for joint models
rmf Remove Special Characters
rSurvTime2 Simulate Survival Times

-- S --

s2 Special Smooths in BAMLSS Formulae
samples Extract Samples
samples.bamlss Extract Samples
samples.bamlss.frame Extract Samples
samplestats Sampling Statistics
scale2 Scaling Vectors and Matrices
set.par BAMLSS Engine Helper Functions
set.starting.values BAMLSS Engine Helper Functions
simJM Simulate longitudinal and survival data for joint models
simSurv Simulate Survival Times
sliceplot Plot Slices of Bivariate Functions
smooth.construct Constructor Functions for Smooth Terms in BAMLSS
smooth.construct.bamlss.formula Constructor Functions for Smooth Terms in BAMLSS
smooth.construct.bamlss.frame Constructor Functions for Smooth Terms in BAMLSS
smooth.construct.bamlss.terms Constructor Functions for Smooth Terms in BAMLSS
smooth.construct.kr.smooth.spec Kriging Smooth Constructor
smooth.construct.linear.smooth.spec Linear Effects for BAMLSS
smooth.construct.randombits.smooth.spec Random Bits for BAMLSS
smooth.construct.sr.smooth.spec Random Effects P-Spline
smooth.construct.tensorX.smooth.spec Markov Chain Monte Carlo for BAMLSS using 'BayesX'
smooth.construct.tensorX3.smooth.spec Markov Chain Monte Carlo for BAMLSS using 'BayesX'
stabsel Stability selection.
summary.bamlss Summary for BAMLSS
surv.transform Survival Model Transformer Function
Surv2 Create a Survival Object for Joint Models
sx Markov Chain Monte Carlo for BAMLSS using 'BayesX'

-- T --

terms.bamlss BAMLSS Model Terms
terms.bamlss.formula BAMLSS Model Terms
terms.bamlss.frame BAMLSS Model Terms
tx Markov Chain Monte Carlo for BAMLSS using 'BayesX'
tx2 Markov Chain Monte Carlo for BAMLSS using 'BayesX'
tx3 Markov Chain Monte Carlo for BAMLSS using 'BayesX'
tx4 Markov Chain Monte Carlo for BAMLSS using 'BayesX'

-- V --

Volcano Artificial Data Set based on Auckland's Maunga Whau Volcano